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Report for CCDS58725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58725.1 Public Homo sapiens 2 LIMS2 24 110 108 CCDS HistoryNCBI Gene:55679Re-query CCDS DB by CCDS ID:58725.1Re-query CCDS DB by GeneID:55679See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58725.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409286.5 ENSP00000386252.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409286.5Link to Ensembl Protein Viewer:ENSP00000386252.1Re-query CCDS DB by Nucleotide ID:ENST00000409286Re-query CCDS DB by Protein ID:ENSP00000386252
Original member Current member EBI ENST00000409754.5 ENSP00000386345.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409754.5Link to Ensembl Protein Viewer:ENSP00000386345.1Re-query CCDS DB by Nucleotide ID:ENST00000409754Re-query CCDS DB by Protein ID:ENSP00000386345
Original member Current member EBI ENST00000410038.5 ENSP00000386570.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410038.5Link to Ensembl Protein Viewer:ENSP00000386570.1Re-query CCDS DB by Nucleotide ID:ENST00000410038Re-query CCDS DB by Protein ID:ENSP00000386570
Original member Current member EBI ENST00000409254.1 ENSP00000386907.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409254.1Link to Ensembl Protein Viewer:ENSP00000386907.1Re-query CCDS DB by Nucleotide ID:ENST00000409254Re-query CCDS DB by Protein ID:ENSP00000386907
Original member Current member NCBI NM_001256542.2 NP_001243471.1 Accepted alive Link to Nucleotide Sequence:NM_001256542.2Link to Protein Sequence:NP_001243471.1Re-query CCDS DB by Nucleotide ID:NM_001256542Re-query CCDS DB by Protein ID:NP_001243471Link to BLAST:NP_001243471.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243471.1 189 Q7Z4I7-4 189 100% 0 0

Chromosomal Locations for CCDS 58725.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127639281 127639428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127640070 127640145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127640270 127640318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127640896 127640988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127642049 127642199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127642923 127642975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGTTCAGGAGCGACGCCTACCACCCTGACCACTTCAACTGCACCCACTGTGGGAAGGAGCTGACAGCCG
AGGCCCGCGAGCTGAAGGGTGAGCTCTACTGCCTGCCCTGCCATGACAAGATGGGCGTCCCCATCTGCGG
GGCCTGCCGCCGGCCCATCGAGGGCCGAGTGGTCAACGCGCTGGGCAAGCAGTGGCACGTGGAGCACTTT
GTCTGTGCCAAGTGTGAGAAGCCATTCCTGGGGCACCGGCACTATGAGAAGAAGGGCCTGGCCTACTGCG
AGACTCACTACAACCAGCTCTTCGGGGACGTCTGCTACAACTGCAGCCATGTGATTGAAGGCGATGTGGT
GTCGGCCCTCAACAAGGCCTGGTGTGTGAGCTGCTTCTCCTGCTCCACCTGCAACAGCAAGCTCACCCTG
AAGAACAAGTTTGTGGAGTTCGACATGAAGCCCGTGTGTAAGAGGTGCTACGAGAAGTTCCCGCTGGAGC
TGAAGAAGCGGCTGAAGAAGCTGTCGGAGCTGACCTCCCGCAAGGCCCAGCCCAAGGCCACAGACCTCAA
CTCTGCCTGA

Translation (189 aa):
MFRSDAYHPDHFNCTHCGKELTAEARELKGELYCLPCHDKMGVPICGACRRPIEGRVVNALGKQWHVEHF
VCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALNKAWCVSCFSCSTCNSKLTL
KNKFVEFDMKPVCKRCYEKFPLELKKRLKKLSELTSRKAQPKATDLNSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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