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Report for CCDS82515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82515.1 Public Homo sapiens 2 THSD7B 24 110 108 CCDS HistoryNCBI Gene:80731Re-query CCDS DB by CCDS ID:82515.1Re-query CCDS DB by GeneID:80731See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 82515.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409968.6 ENSP00000387145.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409968.6Link to Ensembl Protein Viewer:ENSP00000387145.1Re-query CCDS DB by Nucleotide ID:ENST00000409968Re-query CCDS DB by Protein ID:ENSP00000387145
Original member Current member NCBI NM_001316349.2 NP_001303278.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001316349.2Link to Protein Sequence:NP_001303278.1Re-query CCDS DB by Nucleotide ID:NM_001316349Re-query CCDS DB by Protein ID:NP_001303278Link to BLAST:NP_001303278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303278.1 1606 Q9C0I4 1606 100% 0 0

Chromosomal Locations for CCDS 82515.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 136882179 136882317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137056420 137057230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137094873 137095121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137115124 137115293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137160213 137160368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137170741 137170938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137231044 137231235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137232899 137233133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137242457 137242572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137272533 137272662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137275923 137276026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137405613 137405807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137411609 137411872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137450845 137451023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137563221 137563354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137572406 137572556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137616175 137616316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137618392 137618507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137620609 137620726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137642488 137642633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137655501 137655660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137656796 137656969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137657065 137657160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137659664 137659746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137663383 137663575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137667774 137667861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 137676524 137676605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4821 nt):
ATGTTTCCAAAGAGCAACCTAACAGTCACTTGCTGGGTATGGAGGAGCATGAGGAAGCTCTTTCTATTGC
TTTCTCTCTTGCTGTCCCATGCAGCTCATTTGGAAGGCAAAAAGGATAATCAGTTCATCTGGAAACCAGG
TCCGTGGGGAAGGTGTACAGGAGACTGTGGTCCCGGAGGAGTCCAGAGTCGGGCAGTGTGGTGTTTTCAT
GTTGACGGGTGGACAAGTCACCTGTCTAACTGTGGTGAGAGCAACAGGCCTCCAAAGGAAAGAAGTTGTT
TCCGAGTTTGTGACTGGCACAGTGACCTCTTTCAGTGGGAGGTTTCTGACTGGCACCACTGTGTGCTTGT
TCCTTACGCTCGCGGTGAAGTCAAGCCTCGGACTGCAGAGTGTGTGACGGCTCAGCATGGACTGCAGCAC
CGGATGGTGCGCTGCATTCAGAAGCTGAACCGAACTGTGGTTGCAAATGAAATATGCGAACACTTTGCCC
TTCAGCCTCCTACAGAACAGGCTTGCCTCATTCCTTGTCCCCGGGATTGTGTAGTATCTGAGTTCTTACC
ATGGTCCAACTGTAGCAAGGGATGTGGGAAGAAATTGCAGCATAGAACTCGCGCGGTCATAGCTCCCCCT
CTCTTTGGTGGTTTGCAATGTCCAAATCTGACTGAGTCAAGAGCCTGTGATGCTCCCATTTCCTGTCCTC
TTGGGGAAGAGGAATATACATTTAGCCTTAAGGTTGGACCATGGAGTAAATGCAGACTGCCTCATCTTAA
AGAAATTAATCCAAGCGGAAGAACTGTTCTGGATTTTAACTCTGATTCAAATGAGCGAGTCACCTTTAAA
CATCAAAGTTACAAAGCACATCATCATTCGAAGTCTTGGGCAATAGAGATAGGTTATCAAACCCGGCAGG
TTTCGTGTACAAGAAGTGATGGACAAAATGCTATGTTAAGCCTTTGCCTTCAAGATTCCTTCCCATTGAC
TGTTCAGTCCTGCATCATGCCCAAAGACTGTGAAACCTCCCAGTGGTCCTCCTGGAGCCCCTGCTCCAAG
ACATGCCGTTCAGGGAGTCTCTTGCCAGGATTTAGGAGCAGGAGCCGGAACGTGAAGCACATGGCTATTG
GAGGTGGAAAGGAGTGTCCTGAACTTCTTGAGAAAGAGGCCTGCATTGTTGAAGGAGAACTTCTGCAGCA
ATGTCCCAGGTATTCCTGGAGAACTTCTGAATGGAAAGAATGCCAAGTCTCTCTCCTCCTCGAGCAGCAG
GATCCCCACTGGCATGTGACGGGACCCGTGTGTGGCGGTGGGATCCAGACCCGGGAGGTGTACTGTGCCC
AGAGCGTACCAGCAGCTGCCGCACTGAGGGCCAAGGAAGTCTCTAGACCTGTGGAAAAGGCATTATGTGT
GGGACCCGCCCCGTTGCCCTCTCAGCTCTGCAATATCCCTTGCTCTACGGACTGCATAGTATCTTCCTGG
TCAGCCTGGGGCCTGTGCATCCATGAAAACTGTCATGATCCTCAGGGGAAAAAAGGATTTAGAACGAGGC
AGCGCCATGTCCTCATGGAATCTACAGGGCCTGCAGGGCATTGCCCTCATTTGGTGGAGTCTGTTCCTTG
TGAGGATCCAATGTGCTACCGATGGCTGGCATCAGAAGGGATCTGTTTCCCTGATCATGGAAAATGTGGC
CTGGGACATCGTATTCTGAAGGCCGTCTGCCAGAATGACCGCGGAGAAGATGTATCAGGGAGTCTTTGCC
CAGTTCCCCCTCCTCCTGAGAGGAAGTCTTGTGAAATTCCCTGCCGAATGGACTGTGTGCTGAGCGAGTG
GACGGAGTGGTCATCCTGTTCCCAGTCCTGTTCAAATAAAAACTCAGATGGGAAACAGACCAGGTCAAGA
ACTATCCTGGCACTGGCTGGGGAAGGTGGAAAGCCATGTCCCCCTAGTCAGGCTCTCCAAGAGCATCGTT
TGTGTAATGACCATTCCTGTATGCAGCTTCACTGGGAGACATCGCCTTGGGGCCCTTGTTCTGAGGACAC
ATTGGTAACTGCCCTTAATGCAACCATTGGCTGGAATGGAGAAGCCACGTGTGGTGTAGGCATTCAGACT
CGGAGAGTCTTCTGTGTCAAGAGTCACGTGGGACAAGTAATGACCAAAAGATGTCCAGATTCTACTCGAC
CTGAAACTGTGCGCCCCTGTTTTCTCCCATGCAAAAAAGACTGTATTGTGACTGCTTTCAGTGAGTGGAC
ACCCTGCCCAAGGATGTGCCAAGCAGGAAATGCCACAGTAAAACAGTCTCGATACAGAATCATCATCCAA
GAAGCAGCCAATGGAGGCCAGGAATGCCCAGATACCTTATATGAGGAGAGAGAGTGTGAAGATGTTTCCT
TGTGTCCTGTATATCGGTGGAAGCCACAGAAATGGAGCCCTTGCATCTTAGTGCCAGAGTCTGTCTGGCA
GGGAATAACGGGCAGCAGTGAAGCCTGTGGAAAGGGGTTACAAACAAGAGCTGTCTCATGCATCTCTGAT
GACAACCGGTCAGCAGAAATGATGGAATGCCTCAAGCAGACAAACGGCATGCCTCTCCTTGTGCAAGAAT
GCACAGTCCCATGTCGAGAAGACTGCACCTTCACTGCTTGGTCCAAGTTTACGCCCTGCTCCACGAACTG
TGAAGCCACAAAAAGTAGGCGGCGACAGCTCACAGGGAAAAGCAGAAAGAAGGAGAAATGCCAGGATTCT
GACCTTTACCCTCTAGTGGAGACAGAACTATGTCCTTGTGATGAATTTATATCCCAACCTTATGGAAACT
GGTCAGATTGCATTCTTCCAGAAGGCAGAAGGGAGCCTCACCGAGGACTGCGGGTACAAGCAGACAGCAA
AGAATGTGGAGAAGGCCTGCGCTTTCGAGCAGTAGCCTGTTCTGATAAAAATGGAAGACCTGTTGACCCC
TCCTTCTGCAGCAGCTCTGGTTACATTCAAGAAAAATGTGTCATTCCCTGCCCATTTGATTGCAAGTTAA
GCGATTGGTCTAGTTGGGGGTCTTGCAGTTCATCTTGTGGAATTGGAGTGAGAATTCGATCCAAATGGCT
AAAAGAAAAACCTTACAATGGAGGACGACCATGTCCCAAACTGGATCTCAAGAATCAGGTACATGAGGCA
GTCCCATGTTACAGTGAGTGCAATCAGTATTCCTGGGTTGTAGAACACTGGTCTTCATGCAAAATCAACA
ATGAGCTGAGGTCCCTGCGCTGTGGAGGAGGAACACAATCTAGGAAAATCAGATGTGTGAATACTGCGGA
TGGTGAAGGTGGAGCAGTGGATAGCAACCTGTGCAACCAGGATGAAATTCCCCCAGAAACCCAGTCCTGT
TCTCTTATGTGTCCCAATGAGTGTGTCATGTCTGAGTGGGGACTTTGGAGCAAATGCCCACAGTCATGCG
ATCCCCACACAATGCAGAGAAGAACTCGCCACCTGCTAAGACCATCACTGAACTCAAGGACTTGTGCTGA
AGACTCACAGGTGCAGCCTTGCCTCCTGAATGAAAATTGCTTCCAGTTCCAGTACAATCTAACAGAGTGG
AGCACATGCCAGCTGAGTGAAAACGCACCCTGTGGTCAAGGCGTCAGGACCCGCCTGCTAAGCTGTGTGT
GCAGTGATGGCAAGCCAGTCAGCATGGACCAATGTGAGCAGCATAATTTGGAGAAGCCCCAGAGAATGAG
CATTCCCTGCTTGGTGGAATGCGTGGTCAACTGTCAGCTCTCAGGGTGGACGGCTTGGACAGAGTGTTCA
CAGACCTGTGGCCATGGAGGTCGAATGAGCCGGACTCGATTTATCATTATGCCAACCCAAGGAGAAGGAC
GGCCATGCCCCACAGAGCTTACCCAGGAGAAAACCTGCCCAGTGACCCCCTGCTACAGCTGGGTCCTTGG
CAACTGGTCTGCATGTAAATTGGAGGGTGGAGACTGTGGGGAAGGAGTTCAGATCCGCAGCCTTTCCTGC
ATGGTCCACAGTGGTTCAATATCTCATGCAGCTGGACGTGTCGAGGATGCACTGTGTGGAGAAATGCCCT
TTCAGGACAGCATCCTGAAGCAGCTGTGTTCTGTGCCTTGCCCAGGAGACTGCCATTTAACAGAATGGTC
AGAGTGGAGCACATGTGAATTAACCTGCATTGATGGAAGAAGCTTTGAGACTGTGGGCCGCCAGTCTAGA
TCAAGGACTTTTATAATTCAGTCTTTTGAGAACCAAGACAGCTGCCCCCAACAGGTTCTAGAAACACGCC
CTTGTACAGGAGGCAAATGTTATCACTACACATGGAAAGCAAGTCTTTGGAACAATAACGAACGAACTGT
ATGGTGCCAGCGTTCAGATGGCGTTAATGTCACAGGAGGCTGCTCCCCTCAGGCCCGTCCTGCTGCCATT
CGGCAGTGCATTCCAGCCTGCAGAAAACCTTTCTCCTACTGTACACAGGGTGGAGTCTGTGGTTGTGAGA
AGGGCTATACAGAGATAATGAAATCAAATGGTTTCCTGGATTACTGCATGAAAGTACCAGGCTCAGAGGA
TAAAAAAGCTGATGTGAAAAACCTTTCTGGGAAAAACAGACCTGTGAATTCAAAAATACATGATATTTTT
AAAGGATGGTCTCTTCAACCACTTGATCCAGATGGCCGAGTAAAAATTTGGGTTTATGGCGTTTCAGGTG
GCGCTTTTCTCATCATGATTTTCCTAATATTTACTTCCTACCTTGTTTGCAAGAAGCCAAAACCACATCA
AAGCACACCTCCCCAACAGAAGCCTCTGACCTTAGCCTACGATGGAGACTTAGACATGTAA

Translation (1606 aa):
MFPKSNLTVTCWVWRSMRKLFLLLSLLLSHAAHLEGKKDNQFIWKPGPWGRCTGDCGPGGVQSRAVWCFH
VDGWTSHLSNCGESNRPPKERSCFRVCDWHSDLFQWEVSDWHHCVLVPYARGEVKPRTAECVTAQHGLQH
RMVRCIQKLNRTVVANEICEHFALQPPTEQACLIPCPRDCVVSEFLPWSNCSKGCGKKLQHRTRAVIAPP
LFGGLQCPNLTESRACDAPISCPLGEEEYTFSLKVGPWSKCRLPHLKEINPSGRTVLDFNSDSNERVTFK
HQSYKAHHHSKSWAIEIGYQTRQVSCTRSDGQNAMLSLCLQDSFPLTVQSCIMPKDCETSQWSSWSPCSK
TCRSGSLLPGFRSRSRNVKHMAIGGGKECPELLEKEACIVEGELLQQCPRYSWRTSEWKECQVSLLLEQQ
DPHWHVTGPVCGGGIQTREVYCAQSVPAAAALRAKEVSRPVEKALCVGPAPLPSQLCNIPCSTDCIVSSW
SAWGLCIHENCHDPQGKKGFRTRQRHVLMESTGPAGHCPHLVESVPCEDPMCYRWLASEGICFPDHGKCG
LGHRILKAVCQNDRGEDVSGSLCPVPPPPERKSCEIPCRMDCVLSEWTEWSSCSQSCSNKNSDGKQTRSR
TILALAGEGGKPCPPSQALQEHRLCNDHSCMQLHWETSPWGPCSEDTLVTALNATIGWNGEATCGVGIQT
RRVFCVKSHVGQVMTKRCPDSTRPETVRPCFLPCKKDCIVTAFSEWTPCPRMCQAGNATVKQSRYRIIIQ
EAANGGQECPDTLYEERECEDVSLCPVYRWKPQKWSPCILVPESVWQGITGSSEACGKGLQTRAVSCISD
DNRSAEMMECLKQTNGMPLLVQECTVPCREDCTFTAWSKFTPCSTNCEATKSRRRQLTGKSRKKEKCQDS
DLYPLVETELCPCDEFISQPYGNWSDCILPEGRREPHRGLRVQADSKECGEGLRFRAVACSDKNGRPVDP
SFCSSSGYIQEKCVIPCPFDCKLSDWSSWGSCSSSCGIGVRIRSKWLKEKPYNGGRPCPKLDLKNQVHEA
VPCYSECNQYSWVVEHWSSCKINNELRSLRCGGGTQSRKIRCVNTADGEGGAVDSNLCNQDEIPPETQSC
SLMCPNECVMSEWGLWSKCPQSCDPHTMQRRTRHLLRPSLNSRTCAEDSQVQPCLLNENCFQFQYNLTEW
STCQLSENAPCGQGVRTRLLSCVCSDGKPVSMDQCEQHNLEKPQRMSIPCLVECVVNCQLSGWTAWTECS
QTCGHGGRMSRTRFIIMPTQGEGRPCPTELTQEKTCPVTPCYSWVLGNWSACKLEGGDCGEGVQIRSLSC
MVHSGSISHAAGRVEDALCGEMPFQDSILKQLCSVPCPGDCHLTEWSEWSTCELTCIDGRSFETVGRQSR
SRTFIIQSFENQDSCPQQVLETRPCTGGKCYHYTWKASLWNNNERTVWCQRSDGVNVTGGCSPQARPAAI
RQCIPACRKPFSYCTQGGVCGCEKGYTEIMKSNGFLDYCMKVPGSEDKKADVKNLSGKNRPVNSKIHDIF
KGWSLQPLDPDGRVKIWVYGVSGGAFLIMIFLIFTSYLVCKKPKPHQSTPPQQKPLTLAYDGDLDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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