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Report for CCDS46140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46140.1 Public Homo sapiens 19 KASH5 24 110 108 CCDS HistoryNCBI Gene:147872Re-query CCDS DB by CCDS ID:46140.1Re-query CCDS DB by GeneID:147872See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447857.8 ENSP00000404220.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000447857.8Link to Ensembl Protein Viewer:ENSP00000404220.2Re-query CCDS DB by Nucleotide ID:ENST00000447857Re-query CCDS DB by Protein ID:ENSP00000404220
Original member Current member NCBI NM_144688.5 NP_653289.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144688.5Link to Protein Sequence:NP_653289.3Re-query CCDS DB by Nucleotide ID:NM_144688Re-query CCDS DB by Protein ID:NP_653289Link to BLAST:NP_653289.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653289.3 562 Q8N6L0 562 100% 0 0

Chromosomal Locations for CCDS 46140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 49390884 49390926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49394476 49394580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49395106 49395292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49395769 49395833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49397651 49397717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49397982 49398143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49399025 49399142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49399457 49399507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49406886 49406963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49407240 49407296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49407612 49407671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49408967 49409031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49409196 49409283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49409753 49409875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49412968 49413026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49414951 49414996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49417015 49417079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49417159 49417266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 49417369 49417510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGACCTGCCCGAGGGCCCGGTGGGTGGCCCCACTGCGGAAATGTACCTCCGGGAGCGGCCTGAGGAGG
CAAGGCTGGGAATGCCGGTCAGCTTGGAGGAGCAAATACTCAACTCCACGTTCGAAGCTTGTGACCCTCA
GAGGACAGGCACTGTGGCTGTGGCCCAGGTGCTGGCCTACCTGGAGGCTGTGACAGGCCAGGGCCCCCAG
GATGCACGCCTCCAAACATTGGCCAACAGCCTGGACCCCAATGGGGAGGGCCCTAAGGCCACTGTGGACT
TGGACACTTTCCTGGTTGTCATGCGTGACTGGATTGCTGCCTGTCAACTACATGGGGGATTAGAGCTGGA
AGAGGAGACCGCCTTCCAGGGAGCCCTGACCTCCCGGCAACTGCCATCTGGATGCCCAGAAGCTGAGGAG
CCAGCCAACCTGGAGAGCTTCGGAGGCGAAGACCCCAGACCCGAGCTACAAGCCACAGCTGACCTGCTGA
GCAGCCTGGAGGACCTGGAGCTCAGCAACCGACGTCTGGTTGGGGAGAATGCCAAATTGCAGCGGAGCAT
GGAGACAGCTGAGGAGGGGTCAGCACGCCTTGGGGAGGAGATCTTGGCTCTGCGTAAGCAGCTTCACAGC
ACCCAGCAGGCCCTGCAGTTTGCCAAGGCCATGGATGAGGAGCTGGAGGACCTGAAGACTCTGGCCAGGA
GCCTGGAGGAACAGAATCGCAGCCTTCTGGCCCAAGCCCGGCAGGCGGAAAAGGAGCAGCAGCATCTGGT
GGCTGAGATGGAGACTCTGCAGGAGGAGAACGGGAAGCTGCTTGCCGAGCGGGATGGAGTGAAAAAGAGA
AGTCAGGAGCTGGCCATGGAGAAGGACACTTTGAAGCGGCAGCTCTTTGAGTGTGAACACCTCATTTGCC
AAAGAGACACCATCCTCTCTGAGCGCACTCGCGATGTGGAGAGCCTGGCCCAGACCCTGGAAGAATACAG
AGTGACGACGCAGGAACTGAGGCTGGAGATTTCACGCCTGGAGGAGCAGCTGAGTCAGACCTATGAGGGG
CCCGATGAGCTACCTGAAGGGGCCCAGCTGAGAAGAGTGGGCTGGACCGAGCTGCTACCCCCATCGCTGG
GCTTGGAGATCGAGGCCATTCGACAGAAACAGGAAGTGGCAACTGCTGATCTCTCCAACCCTCTGTGTGG
GGTGTGGCAGTGGGAGGAAGTCATCCATGAGACCAGTGAGGAAACTGAGTTTCCATCTGAAGCCCCAGCT
GGGGGACAGAGAAACTTCCAGGGAGAGCCAGCGCACCCTGAAGAAGGAAGGAAGGAGCCATCCATGTGGT
TGACCAGAAGAGAGGAAGAGGAGGATGCAGAGAGCCAGGTCACGGCTGATCTCCCTGTCCCTCTAGGAGC
CCCTCGCCCTGGAGACATCCCAGAAAACCCTCCAGAGAGACCTGCGCGGCGGGAACTCCAGCAAGCCCTG
GTGCCTGTGATGAAAAAGCTGGTCCCAGTCAGGAGGAGGGCCTGGGGCCAGCTCTGCCTGCCCCCACAGC
GGCTCAGAGTCACTCGACATCCACTGATCCCAGCTCCTGTCCTGGGCCTGCTGCTGCTGCTGCTGCTCTC
TGTCCTGCTGCTTGGCCCGTCCCCACCTCCCACCTGGCCCCACCTCCAGCTCTGCTACCTCCAGCCCCCT
CCAGTGTGA

Translation (562 aa):
MDLPEGPVGGPTAEMYLRERPEEARLGMPVSLEEQILNSTFEACDPQRTGTVAVAQVLAYLEAVTGQGPQ
DARLQTLANSLDPNGEGPKATVDLDTFLVVMRDWIAACQLHGGLELEEETAFQGALTSRQLPSGCPEAEE
PANLESFGGEDPRPELQATADLLSSLEDLELSNRRLVGENAKLQRSMETAEEGSARLGEEILALRKQLHS
TQQALQFAKAMDEELEDLKTLARSLEEQNRSLLAQARQAEKEQQHLVAEMETLQEENGKLLAERDGVKKR
SQELAMEKDTLKRQLFECEHLICQRDTILSERTRDVESLAQTLEEYRVTTQELRLEISRLEEQLSQTYEG
PDELPEGAQLRRVGWTELLPPSLGLEIEAIRQKQEVATADLSNPLCGVWQWEEVIHETSEETEFPSEAPA
GGQRNFQGEPAHPEEGRKEPSMWLTRREEEEDAESQVTADLPVPLGAPRPGDIPENPPERPARRELQQAL
VPVMKKLVPVRRRAWGQLCLPPQRLRVTRHPLIPAPVLGLLLLLLLSVLLLGPSPPPTWPHLQLCYLQPP
PV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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