NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11860.1 Public Homo sapiens 18 PRELID3A 24 110 108 CCDS HistoryNCBI Gene:10650Re-query CCDS DB by CCDS ID:11860.1Re-query CCDS DB by GeneID:10650See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11860.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336990.8 ENSP00000338988.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336990.8Link to Ensembl Protein Viewer:ENSP00000338988.3Re-query CCDS DB by Nucleotide ID:ENST00000336990Re-query CCDS DB by Protein ID:ENSP00000338988
Original member Current member EBI ENST00000440960.6 ENSP00000404700.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000440960.6Link to Ensembl Protein Viewer:ENSP00000404700.1Re-query CCDS DB by Nucleotide ID:ENST00000440960Re-query CCDS DB by Protein ID:ENSP00000404700
Original member Current member NCBI NM_001142405.2 NP_001135877.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001142405.2Link to Protein Sequence:NP_001135877.1Re-query CCDS DB by Nucleotide ID:NM_001142405Re-query CCDS DB by Protein ID:NP_001135877Link to BLAST:NP_001135877.1
Original member Current member NCBI NM_006553.4 NP_006544.2 Accepted alive Link to Nucleotide Sequence:NM_006553.4Link to Protein Sequence:NP_006544.2Re-query CCDS DB by Nucleotide ID:NM_006553Re-query CCDS DB by Protein ID:NP_006544Link to BLAST:NP_006544.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135877.1 172 Q96N28-1 172 100% 0 0
NP_006544.2 172 Q96N28-1 172 100% 0 0

Chromosomal Locations for CCDS 11860.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12407976 12408007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12420325 12420493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12421540 12421629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12427041 12427111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12427221 12427323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12429350 12429403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGAAGATCTGGAGCTCGGAGCACGTGTTTGGCCACCCGTGGGACACGGTCATCCAGGCGGCCATGCGCA
AGTACCCGAACCCGATGAACCCGAGCGTGCTGGGCGTGGATGTGCTACAGCGCCGCGTGGACGGCCGCGG
CCGCCTGCACAGCTTGCGCCTGCTCAGCACCGAGTGGGGGCTGCCCAGCCTCGTGAGAGCGATTTTGGGA
ACCAGTAGGACATTGACATACATCCGAGAACATTCTGTGGTGGATCCAGTGGAAAAGAAAATGGAACTTT
GTTCTACCAATATCACACTCACAAATTTGGTGTCAGTTAATGAGAGGTTGGTGTACACACCTCATCCAGA
GAACCCAGAAATGACCGTGCTCACACAAGAAGCCATCATCACTGTGAAGGGGATTAGCCTTGGTAGTTAT
TTGGAAAGTTTAATGGCCAATACGATATCATCCAATGCAAAGAAGGGGTGGGCTGCTATCGAGTGGATAA
TTGAACACTCTGAAAGCGCTGTGAGCTAA

Translation (172 aa):
MKIWSSEHVFGHPWDTVIQAAMRKYPNPMNPSVLGVDVLQRRVDGRGRLHSLRLLSTEWGLPSLVRAILG
TSRTLTYIREHSVVDPVEKKMELCSTNITLTNLVSVNERLVYTPHPENPEMTVLTQEAIITVKGISLGSY
LESLMANTISSNAKKGWAAIEWIIEHSESAVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH