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Report for CCDS55124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55124.1 Public Homo sapiens 7 LRRD1 24 110 108 CCDS HistoryNCBI Gene:401387Re-query CCDS DB by CCDS ID:55124.1Re-query CCDS DB by GeneID:401387See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55124.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458448.6 ENSP00000405987.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000458448.6Link to Ensembl Protein Viewer:ENSP00000405987.1Re-query CCDS DB by Nucleotide ID:ENST00000458448Re-query CCDS DB by Protein ID:ENSP00000405987
Original member Current member NCBI NM_001161528.2 NP_001155000.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001161528.2Link to Protein Sequence:NP_001155000.1Re-query CCDS DB by Nucleotide ID:NM_001161528Re-query CCDS DB by Protein ID:NP_001155000Link to BLAST:NP_001155000.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155000.1 860 A4D1F6-1 860 100% 0 0

Chromosomal Locations for CCDS 55124.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 92144888 92145074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92146083 92146200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92150534 92150695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92159005 92159203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92163286 92165202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGTCTGAAAAGGAGGGTATGTCAGAAGTGCTAGAGGATACTATTAGTCAATTTAGGAAAGAATCTAGAT
CACAGTCAATGAAGGAGCCTGGCTTTATTAAAGAAACATCAAATTTGATAAACGAAGCTTCTGATTACCT
GGAAGGGAAATCTTCTAACCAGATTTATGAAACACATCCTAGACAGAATACATTAGAGTCAACATCTTCC
TCTGGAAGGAAGTCTAAGAGAAATGAAGAACAAAAGAAAAATCTTCAATTTTCTGAAACAAGCACTAGAA
CAGGAACTTCACAGAGTTTATCATCACTAACTGGGAGGACTGCAGAATATCAGGCTTTGGTTAACTTCCT
ATCTCATGAAACAGTAGGAGAAGTTAGTCCACAAGTCTCTGAAGAAAATCAGAAACAACTTGGCCTAGGG
GCAGATAACTTTACAGTTAACCTTGAGGCCAAGGGTTTACAGGAATTTCCTAAGGACATTTTAAAAATCA
AATATGTAAAATATCTATATTTAGACAAGAATCAAATCAAAACATTTCAAGGGGCAGACTCAGGTGATCT
GTTAGGACTTGAAATTCTATCCCTGCAAGAAAATGGATTATCATCACTTCCATCTGAAATTCAGTTACTT
CATAATTTAAGGATATTAAATGTCAGTCATAACCACATATCACATATACCTAAAGAAATATCTCAGCTTG
GGAATATCAGACAACTCTTTTTTTATAACAATTACATTGAAAATTTTCCTTCTGACTTAGAATGTCTTGG
AAACTTGGAAATTTTAAGTTTGGGTAAAAATAAGTTAAGACATATACCAGATACTCTGCCTAGTTTAAAA
ACCTTGAGGGTTCTCAATTTGGAATATAATCAGTTAACAACATTTCCTAAAGCTCTCTGCTTCCTTCCAA
AGTTAATTTCACTAGACCTTACTGGAAACCTAATAAGCAGTTTGCCAAAAGAAATTAGAGAGCTTAAAAA
TTTAGAAACACTTTTAATGGATCACAATAAGCTTACCTTTCTGGCTGTAGAAATTTTTCAGTTACTCAAA
ATAAAAGAACTCCAACTGGCCGACAATAAATTGGAAGTTATTTCACACAAAATTGAGAATTTCAGGGAAC
TTAGGATTCTTATACTTGATAAAAATTTATTGAAAAATATACCAGAGAAAATATCTTGCTGTGCAATGTT
GGAATGCCTTAGTCTTAGTGATAATAAATTAACAGAACTCCCTAAGTACATCCATAAGCTTAACAATTTA
AGAAAACTCCATGTAAACAGAAATAATATGGTAAAAATAACTGACTGTATCTCACATCTTAATAACATAT
GCAGTCTAGAATTTTCAGGAAACATAATCACAGATGTTCCCATTGAAATAAAAAACTGCCAAAAAATAAT
TAAAATTGAATTGAGTTATAACAAAATAATGTATTTTCCATTGGGACTGTGTGCTTTAGATTCTCTTTAT
TATTTGAGTGTTAATGGAAATTATATTTCAGAAATACCTGTGGATATATCTTTCAGTAAACAACTGCTTC
ATTTAGAATTGAGTGAAAACAAACTCCTCATATTTTCTGAGCACTTTTGTTCTCTTATTAATCTTAAATA
CCTGGATCTTGGTAAAAACCAAATAAAGAAAATTCCAGCATCAATTTCTAATATGATATCACTCCACGTA
CTTATTTTATGCTGTAATAAATTTGAAACTTTCCCTAGAGAATTGTGTACTTTAGAAAATTTGCAAGTAC
TTGATCTTTCGGAAAACCAATTACAGAAAATCTCTTCAGACATCTGTAATTTAAAAGGAATCCAGAAATT
AAACTTCTCAAGCAATCAATTTATACATTTTCCTATTGAACTGTGCCAACTTCAATCACTGGAACAGCTG
AATATAAGTCAGATAAAAGGGAGAAAGCTAACAAGACTTCCAGGAGAGCTATCTAATATGACTCAACTTA
AAGAACTTGATATCTCAAATAATGCAATCAGAGAGATTCCAAGAAATATAGGAGAATTGAGAAATTTGGT
TAGTTTACATGCATACAATAATCAAATAAGTTATCTTCCACCATCTTTGCTATCTTTAAATGATCTGCAG
CAACTAAACCTGAGTGGAAATAATCTGACAGCTCTACCTAGTGCTATCTACAATATTTTTTCACTGAAGG
AGATAAATTTTGATGACAACCCTTTGCTGAGACCTCCAGTGGAAATCTGTAAAGGAAAACAGTTGTATAC
TATTGCACGCTATCTACAGAGGGCAGATGAAAGAGATGAGAAAATTTTAGAGAAGATATTCAAGATAGTT
GCCAACAACATCACTGAAACCAATTTTGAATTTTTATGTCAAAAACTAAACCTGGCAAACTCAGAAACTG
ATATGCCTACAAAGAGCACTGTTTCATTAAGTGAGAGAGCCCACCAAGCACTTGTTATATGGAAAACACA
AAGTAACAAGTTATCACTAACTGCTGCTGCTTTAAGAGATCAACTAATTCGAGCACTAACTATGATAGGA
GCATATGAAATTATGGACAAAATAACAGCTTTAAATCTTTTTACGCGTGCAATTAAATTCTAA

Translation (860 aa):
MSEKEGMSEVLEDTISQFRKESRSQSMKEPGFIKETSNLINEASDYLEGKSSNQIYETHPRQNTLESTSS
SGRKSKRNEEQKKNLQFSETSTRTGTSQSLSSLTGRTAEYQALVNFLSHETVGEVSPQVSEENQKQLGLG
ADNFTVNLEAKGLQEFPKDILKIKYVKYLYLDKNQIKTFQGADSGDLLGLEILSLQENGLSSLPSEIQLL
HNLRILNVSHNHISHIPKEISQLGNIRQLFFYNNYIENFPSDLECLGNLEILSLGKNKLRHIPDTLPSLK
TLRVLNLEYNQLTTFPKALCFLPKLISLDLTGNLISSLPKEIRELKNLETLLMDHNKLTFLAVEIFQLLK
IKELQLADNKLEVISHKIENFRELRILILDKNLLKNIPEKISCCAMLECLSLSDNKLTELPKYIHKLNNL
RKLHVNRNNMVKITDCISHLNNICSLEFSGNIITDVPIEIKNCQKIIKIELSYNKIMYFPLGLCALDSLY
YLSVNGNYISEIPVDISFSKQLLHLELSENKLLIFSEHFCSLINLKYLDLGKNQIKKIPASISNMISLHV
LILCCNKFETFPRELCTLENLQVLDLSENQLQKISSDICNLKGIQKLNFSSNQFIHFPIELCQLQSLEQL
NISQIKGRKLTRLPGELSNMTQLKELDISNNAIREIPRNIGELRNLVSLHAYNNQISYLPPSLLSLNDLQ
QLNLSGNNLTALPSAIYNIFSLKEINFDDNPLLRPPVEICKGKQLYTIARYLQRADERDEKILEKIFKIV
ANNITETNFEFLCQKLNLANSETDMPTKSTVSLSERAHQALVIWKTQSNKLSLTAAALRDQLIRALTMIG
AYEIMDKITALNLFTRAIKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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