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Report for CCDS6653.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6653.1 Public Homo sapiens 9 GCNT1 24 110 108 CCDS HistoryNCBI Gene:2650Re-query CCDS DB by CCDS ID:6653.1Re-query CCDS DB by GeneID:2650See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6653.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376730.5 ENSP00000365920.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376730.5Link to Ensembl Protein Viewer:ENSP00000365920.4Re-query CCDS DB by Nucleotide ID:ENST00000376730Re-query CCDS DB by Protein ID:ENSP00000365920
Original member Current member EBI ENST00000444201.6 ENSP00000390703.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444201.6Link to Ensembl Protein Viewer:ENSP00000390703.2Re-query CCDS DB by Nucleotide ID:ENST00000444201Re-query CCDS DB by Protein ID:ENSP00000390703
Original member Current member EBI ENST00000442371.5 ENSP00000415454.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442371.5Link to Ensembl Protein Viewer:ENSP00000415454.1Re-query CCDS DB by Nucleotide ID:ENST00000442371Re-query CCDS DB by Protein ID:ENSP00000415454
Original member Current member NCBI NM_001097633.2 NP_001091102.1 Accepted alive Link to Nucleotide Sequence:NM_001097633.2Link to Protein Sequence:NP_001091102.1Re-query CCDS DB by Nucleotide ID:NM_001097633Re-query CCDS DB by Protein ID:NP_001091102Link to BLAST:NP_001091102.1
Original member Current member NCBI NM_001097634.1 NP_001091103.1 Accepted alive Link to Nucleotide Sequence:NM_001097634.1Link to Protein Sequence:NP_001091103.1Re-query CCDS DB by Nucleotide ID:NM_001097634Re-query CCDS DB by Protein ID:NP_001091103Link to BLAST:NP_001091103.1
Original member Current member NCBI NM_001097635.2 NP_001091104.1 Accepted alive Link to Nucleotide Sequence:NM_001097635.2Link to Protein Sequence:NP_001091104.1Re-query CCDS DB by Nucleotide ID:NM_001097635Re-query CCDS DB by Protein ID:NP_001091104Link to BLAST:NP_001091104.1
Original member Current member NCBI NM_001097636.2 NP_001091105.1 Accepted alive Link to Nucleotide Sequence:NM_001097636.2Link to Protein Sequence:NP_001091105.1Re-query CCDS DB by Nucleotide ID:NM_001097636Re-query CCDS DB by Protein ID:NP_001091105Link to BLAST:NP_001091105.1
Original member Current member NCBI NM_001490.5 NP_001481.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001490.5Link to Protein Sequence:NP_001481.2Re-query CCDS DB by Nucleotide ID:NM_001490Re-query CCDS DB by Protein ID:NP_001481Link to BLAST:NP_001481.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091102.1 428 Q02742 428 100% 0 0
NP_001091103.1 428 Q02742 428 100% 0 0
NP_001091104.1 428 Q02742 428 100% 0 0
NP_001091105.1 428 Q02742 428 100% 0 0
NP_001481.2 428 Q02742 428 100% 0 0

Chromosomal Locations for CCDS 6653.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 76502382 76503668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1287 nt):
ATGCTGAGGACGTTGCTGCGAAGGAGACTTTTTTCTTATCCCACCAAATACTACTTTATGGTTCTTGTTT
TATCCCTAATCACCTTCTCCGTTTTAAGGATTCATCAAAAGCCTGAATTTGTAAGTGTCAGACACTTGGA
GCTTGCTGGGGAGAATCCTAGTAGTGATATTAATTGCACCAAAGTTTTACAGGGTGATGTAAATGAAATC
CAAAAGGTAAAGCTTGAGATCCTAACAGTGAAATTTAAAAAGCGCCCTCGGTGGACACCTGACGACTATA
TAAACATGACCAGTGACTGTTCTTCTTTCATCAAGAGACGCAAATATATTGTAGAACCCCTTAGTAAAGA
AGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAGATTGAAATGCTTGACAGGCTGCTG
AGGGCCATCTATATGCCTCAGAATTTCTATTGCATTCATGTGGACACAAAATCCGAGGATTCCTATTTAG
CTGCAGTGATGGGCATCGCTTCCTGTTTTAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTA
TGCATCGTGGAGCCGGGTTCAGGCTGACCTCAACTGCATGAAGGATCTCTATGCAATGAGTGCAAACTGG
AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCCATTAAAACCAACCTAGAAATTGTCAGGAAGCTCA
AGTTGTTAATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCCATAAAGAAGAAAGGTGGAAGAA
GCGGTATGAGGTCGTTAATGGAAAGCTGACAAACACAGGGACTGTCAAAATGCTTCCTCCACTCGAAACA
CCTCTCTTTTCTGGCAGTGCCTACTTCGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAA
AAATCCAAAAGTTGATGGAGTGGGCACAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACCATCCA
AAGGATTCCTGAAGTCCCGGGCTCACTCCCTGCCAGCCATAAGTATGATCTGTCTGACATGCAAGCAGTT
GCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCAAGGGTGCTCCCTACCCGCCCTGCGATG
GAGTCCATGTGCGCTCAGTGTGCATTTTCGGAGCTGGTGACTTGAACTGGATGCTGCGCAAACACCACTT
GTTTGCCAATAAGTTTGACGTGGATGTTGACCTCTTTGCCATCCAGTGTTTGGATGAGCATTTGAGACAC
AAAGCTTTGGAGACATTAAAACACTGA

Translation (428 aa):
MLRTLLRRRLFSYPTKYYFMVLVLSLITFSVLRIHQKPEFVSVRHLELAGENPSSDINCTKVLQGDVNEI
QKVKLEILTVKFKKRPRWTPDDYINMTSDCSSFIKRRKYIVEPLSKEEAEFPIAYSIVVHHKIEMLDRLL
RAIYMPQNFYCIHVDTKSEDSYLAAVMGIASCFSNVFVASRLESVVYASWSRVQADLNCMKDLYAMSANW
KYLINLCGMDFPIKTNLEIVRKLKLLMGENNLETERMPSHKEERWKKRYEVVNGKLTNTGTVKMLPPLET
PLFSGSAYFVVSREYVGYVLQNEKIQKLMEWAQDTYSPDEYLWATIQRIPEVPGSLPASHKYDLSDMQAV
ARFVKWQYFEGDVSKGAPYPPCDGVHVRSVCIFGAGDLNWMLRKHHLFANKFDVDVDLFAIQCLDEHLRH
KALETLKH


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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