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Report for CCDS5819.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
5819.1 |
Public |
Homo sapiens |
7 |
CPA5 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:93979](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:5819.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:93979](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 7 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 5819.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000393213.7 |
ENSP00000376907.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000393213.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000376907.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000393213](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000376907](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000474905.6 |
ENSP00000417314.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000474905.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000417314.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000474905](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000417314](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000461828.5 |
ENSP00000418183.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000461828.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000418183.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000461828](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000418183](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000466363.6 |
ENSP00000419025.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000466363.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000419025.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000466363](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000419025](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000485477.5 |
ENSP00000420237.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000485477.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000420237.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000485477](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000420237](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001127441.2 |
NP_001120913.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001127441.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001120913.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001127441](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001120913](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001120913.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001318223.2 |
NP_001305152.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001318223.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001305152.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001318223](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001305152](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001305152.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_080385.5 |
NP_525124.3 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_080385.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_525124.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_080385](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_525124](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_525124.3](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 5819.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1311 nt): ATGCAGGGCACCCCTGGAGGCGGGACGCGCCCTGGGCCATCCCCCGTGGACAGGCGGACACTCCTGGTCT TCAGCTTTATCCTGGCAGCAGCTTTGGGCCAAATGAATTTCACAGGGGACCAGGTTCTTCGAGTCCTGGC CAAAGATGAGAAGCAGCTTTCACTTCTCGGGGATCTGGAGGGCCTGAAACCCCAGAAGGTGGACTTCTGG CGTGGCCCAGCCAGGCCCAGCCTCCCTGTGGATATGAGAGTTCCTTTCTCTGAACTGAAAGACATCAAAG CTTATCTGGAGTCTCATGGACTTGCTTACAGCATCATGATAAAGGACATCCAGGTGCTGCTGGATGAGGA AAGACAGGCCATGGCGAAATCCCGCCGGCTGGAGCGCAGCACCAACAGCTTCAGTTACTCATCATACCAC ACCCTGGAGGAGATATATAGCTGGATTGACAACTTTGTAATGGAGCATTCCGATATTGTCTCAAAAATTC AGATTGGCAACAGCTTTGAAAACCAGTCCATTCTTGTCCTGAAGTTCAGCACTGGAGGTTCTCGGCACCC AGCCATCTGGATTGACACTGGAATTCACTCCCGGGAGTGGATCACCCATGCCACCGGCATCTGGACTGCC AATAAGATTGTCAGTGATTATGGCAAAGACCGTGTCCTGACAGACATACTGAATGCCATGGACATCTTCA TAGAGCTCGTCACAAACCCTGATGGGTTTGCTTTTACCCACAGCATGAACCGCTTATGGCGGAAGAACAA GTCCATCAGACCTGGAATCTTCTGCATCGGCGTGGATCTCAACAGGAACTGGAAGTCGGGTTTTGGAGGA AATGGTTCTAACAGCAACCCCTGCTCAGAAACTTATCACGGGCCCTCCCCTCAGTCGGAGCCGGAGGTGG CTGCCATAGTGAACTTCATCACAGCCCATGGCAACTTCAAGGCTCTGATCTCCATCCACAGCTACTCTCA GATGCTTATGTACCCTTACGGCCGATTGCTGGAGCCCGTTTCAAATCAGAGGGAGTTGTACGATCTTGCC AAGGATGCGGTGGAGGCCTTGTATAAGGTCCATGGGATCGAGTACATTTTTGGCAGCATCAGCACCACCC TCTATGTGGCCAGTGGGATCACCGTCGACTGGGCCTATGACAGTGGCATCAAGTACGCCTTCAGCTTTGA GCTCCGGGACACTGGGCAGTATGGCTTCCTGCTGCCGGCCACACAGATCATCCCCACGGCCCAGGAGACG TGGATGGCGCTTCGGACCATCATGGAGCACACCCTGAATCACCCCTACTAG
Translation (436 aa): MQGTPGGGTRPGPSPVDRRTLLVFSFILAAALGQMNFTGDQVLRVLAKDEKQLSLLGDLEGLKPQKVDFW RGPARPSLPVDMRVPFSELKDIKAYLESHGLAYSIMIKDIQVLLDEERQAMAKSRRLERSTNSFSYSSYH TLEEIYSWIDNFVMEHSDIVSKIQIGNSFENQSILVLKFSTGGSRHPAIWIDTGIHSREWITHATGIWTA NKIVSDYGKDRVLTDILNAMDIFIELVTNPDGFAFTHSMNRLWRKNKSIRPGIFCIGVDLNRNWKSGFGG NGSNSNPCSETYHGPSPQSEPEVAAIVNFITAHGNFKALISIHSYSQMLMYPYGRLLEPVSNQRELYDLA KDAVEALYKVHGIEYIFGSISTTLYVASGITVDWAYDSGIKYAFSFELRDTGQYGFLLPATQIIPTAQET WMALRTIMEHTLNHPY
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