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Report for CCDS3200.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
3200.1 |
Public |
Homo sapiens |
3 |
SERPINI2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:5276](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:3200.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:5276](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana)
Attributes |
CDS uses downstream AUG |
Sequence IDs included in CCDS 3200.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000264677.9 |
ENSP00000264677.4 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000264677.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000264677.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000264677](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000264677](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000461846.5 |
ENSP00000417692.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000461846.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000417692.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000461846](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000417692](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000471111.5 |
ENSP00000419407.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000471111.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000419407.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000471111](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000419407](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001012303.3 |
NP_001012303.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001012303.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001012303.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001012303](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001012303](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001012303.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001394327.1 |
NP_001381256.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001394327.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001381256.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001394327](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001381256](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001381256.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_006217.6 |
NP_006208.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_006217.6](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_006208.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_006217](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_006208](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_006208.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 3200.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1218 nt): ATGGACACAATCTTCTTGTGGAGTCTTCTATTGCTGTTTTTTGGAAGTCAAGCCTCAAGATGCTCAGCTC AAAAAAATACCGAATTTGCAGTGGATCTTTATCAAGAGGTTTCCTTATCTCATAAGGACAACATTATATT TTCACCCCTTGGAATAACTTTGGTTCTTGAGATGGTACAACTGGGAGCCAAAGGAAAAGCACAGCAGCAG ATAAGACAAACTTTAAAACAACAGGAAACCTCAGCTGGGGAAGAATTTTTTGTACTGAAGTCATTTTTCT CTGCCATCTCAGAGAAAAAACAAGAATTTACATTTAATCTTGCCAATGCCCTCTACCTTCAAGAAGGATT CACTGTGAAAGAACAGTATCTCCATGGCAACAAGGAATTTTTTCAGAGTGCTATAAAACTGGTGGATTTT CAAGATGCAAAGGCTTGTGCAGAGATGATAAGTACCTGGGTAGAAAGAAAAACAGATGGAAAAATTAAAG ACATGTTTTCAGGGGAAGAATTTGGCCCTCTGACTCGGCTTGTCCTGGTGAATGCTATTTATTTCAAAGG AGATTGGAAACAGAAATTCAGAAAAGAGGACACACAGCTGATAAATTTTACTAAGAAAAATGGTTCAACT GTCAAAATTCCAATGATGAAGGCTCTTCTGAGAACAAAATATGGTTATTTTTCTGAATCTTCCCTGAACT ACCAAGTTTTAGAATTGTCTTACAAAGGTGATGAATTTAGCTTAATTATCATACTTCCTGCAGAAGGTAT GGATATAGAAGAAGTGGAAAAACTAATTACTGCTCAACAAATCCTAAAATGGCTCTCTGAGATGCAAGAA GAGGAAGTAGAAATAAGCCTCCCTAGATTTAAAGTAGAACAAAAAGTAGACTTCAAAGACGTTTTGTATT CTTTGAACATAACCGAGATATTTAGTGGTGGCTGCGACCTTTCTGGAATAACAGATTCATCTGAAGTGTA TGTTTCCCAAGTGACGCAAAAAGTTTTCTTTGAGATAAATGAAGATGGTAGTGAAGCTGCAACATCAACT GGCATACACATCCCTGTGATCATGAGTCTGGCTCAAAGCCAATTTATAGCAAATCATCCATTTCTGTTTA TTATGAAGCATAATCCAACAGAATCAATTCTGTTTATGGGAAGAGTGACAAATCCTGACACCCAGGAGAT AAAAGGAAGAGATTTAGATTCACTGTGA
Translation (405 aa): MDTIFLWSLLLLFFGSQASRCSAQKNTEFAVDLYQEVSLSHKDNIIFSPLGITLVLEMVQLGAKGKAQQQ IRQTLKQQETSAGEEFFVLKSFFSAISEKKQEFTFNLANALYLQEGFTVKEQYLHGNKEFFQSAIKLVDF QDAKACAEMISTWVERKTDGKIKDMFSGEEFGPLTRLVLVNAIYFKGDWKQKFRKEDTQLINFTKKNGST VKIPMMKALLRTKYGYFSESSLNYQVLELSYKGDEFSLIIILPAEGMDIEEVEKLITAQQILKWLSEMQE EEVEISLPRFKVEQKVDFKDVLYSLNITEIFSGGCDLSGITDSSEVYVSQVTQKVFFEINEDGSEAATST GIHIPVIMSLAQSQFIANHPFLFIMKHNPTESILFMGRVTNPDTQEIKGRDLDSL
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