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Report for CCDS77753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77753.1 Public Homo sapiens 3 LRTM1 24 110 108 CCDS HistoryNCBI Gene:57408Re-query CCDS DB by CCDS ID:77753.1Re-query CCDS DB by GeneID:57408See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77753.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000493075.1 ENSP00000419772.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000493075.1Link to Ensembl Protein Viewer:ENSP00000419772.1Re-query CCDS DB by Nucleotide ID:ENST00000493075Re-query CCDS DB by Protein ID:ENSP00000419772
Original member Current member NCBI NM_001304389.2 NP_001291318.1 Accepted alive Link to Nucleotide Sequence:NM_001304389.2Link to Protein Sequence:NP_001291318.1Re-query CCDS DB by Nucleotide ID:NM_001304389Re-query CCDS DB by Protein ID:NP_001291318Link to BLAST:NP_001291318.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291318.1 269 Q9HBL6-2 269 100% 0 0

Chromosomal Locations for CCDS 77753.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 54918459 54918892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 54924619 54924994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGACCTTAAACTTGTCCAACAATTCCCTTTCAAATCTGGCCCCTGGAGCTTTCCATGGGCTTCAGCACT
TGCAGGTTTTAAATCTAACCCAGAATTCACTCCTTTCCCTGGAAAGCAGACTTTTCCATTCCCTCCCTCA
GCTGAGGGAGCTTGATTTGTCATCAAACAACATAAGCCACCTTCCCACATCCTTGGGAGAGACTTGGGAG
AACCTAACTATACTTGCGGTTCAACAAAACCAGCTTCAGCAGCTTGATCGAGCGCTCCTGGAATCCATGC
CCAGTGTGAGGCTTTTACTTCTCAAGGACAACCTCTGGAAATGCAATTGCCACTTGCTCGGTCTTAAACT
CTGGCTGGAGAAATTTGTCTATAAAGGGGGACTAACAGACGGCATCATCTGTGAATCACCAGACACCTGG
AAGGGAAAGGACCTCCTTAGGATCCCTCATGAGCTGTACCAGCCCTGCCCTCTTCCTGCTCCTGATCCAG
TGTCCTCGCAGGCTCAGTGGCCCGGCTCTGCCCACGGTGTGGTCCTGAGGCCTCCTGAGAACCACAACGC
GGGGGAGCGAGAACTCTTGGAGTGCGAGCTCAAACCCAAGCCAAGGCCGGCCAACCTGCGTCATGCCATT
GCCACTGTCATCATCACTGGCGTTGTGTGTGGGATTGTGTGTCTCATGATGTTGGCAGCTGCCATCTATG
GCTGCACCTATGCGGCAATCACAGCCCAGTACCATGGGGGACCCTTGGCTCAAACCAATGATCCTGGGAA
GGTGGAAGAAAAAGAGCGATTTGACAGCTCACCAGCCTGA

Translation (269 aa):
MTLNLSNNSLSNLAPGAFHGLQHLQVLNLTQNSLLSLESRLFHSLPQLRELDLSSNNISHLPTSLGETWE
NLTILAVQQNQLQQLDRALLESMPSVRLLLLKDNLWKCNCHLLGLKLWLEKFVYKGGLTDGIICESPDTW
KGKDLLRIPHELYQPCPLPAPDPVSSQAQWPGSAHGVVLRPPENHNAGERELLECELKPKPRPANLRHAI
ATVIITGVVCGIVCLMMLAAAIYGCTYAAITAQYHGGPLAQTNDPGKVEEKERFDSSPA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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