CCDS Report for Consensus CDS

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Report for CCDS54839.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
54839.1	Public	Homo sapiens	5	RAI14	24	110	108

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54839.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000515799.5	ENSP00000427123.1		Accepted	alive
		NCBI	NM_001145525.2	NP_001138997.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001138997.1	983	Q9P0K7-2	983	100%	0	0

Chromosomal Locations for CCDS 54839.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)

Genome Browser links:

Chromosome	Start	Stop
5	34688204	34688248
5	34757468	34757598
5	34795939	34796027
5	34803712	34803776
5	34807800	34807857
5	34808584	34808654
5	34811012	34811118
5	34811767	34811945
5	34812180	34812208
5	34813574	34813660
5	34814583	34814669
5	34818797	34818851
5	34821732	34821850
5	34822956	34824491
5	34826330	34826479
5	34829732	34829797
5	34830688	34830765

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2952 nt):
ATGCAGCCTACATATCTCCCGTGGCTTTCAGCTAAGGAGAAAAAGACCAATGAGTGGAACAAGAATGATG ACCGGCTACTGCAGGCCGTGGAGAATGGAGATGCGGAGAAGGTGGCCTCACTGCTCGGCAAGAAGGGGGC CAGTGCCACCAAACACGACAGTGAGGGCAAGACCGCTTTCCATCTTGCTGCTGCAAAAGGACACGTGGAA TGCCTCAGGGTCATGATTACACATGGTGTGGATGTGACAGCCCAAGATACTACCGGACACAGCGCCTTAC ATCTCGCAGCCAAGAACAGCCACCATGAATGCATCAGGAAGCTGCTTCAGTCTAAATGCCCAGCCGAAAG TGTCGACAGCTCTGGGAAAACAGCTTTACATTATGCAGCGGCTCAGGGCTGCCTTCAAGCTGTGCAGATT CTCTGCGAACACAAGAGCCCCATAAACCTCAAAGATTTGGATGGGAATATACCGCTGCTTCTTGCTGTAC AAAATGGTCACAGTGAGATCTGTCACTTTCTCCTGGATCATGGAGCAGATGTCAATTCCAGGAACAAAAG TGGAAGAACTGCTCTCATGCTGGCCTGTGAGATTGGCAGCTCTAACGCTGTGGAAGCCTTAATTAAAAAG GGTGCAGACCTAAACCTTGTAGATTCTCTTGGATACAATGCCTTACATTATTCCAAACTCTCAGAAAATG CAGGAATTCAAAGCCTTCTATTATCAAAAATCTCTCAGGATGCTGATTTAAAGACCCCAACAAAACCAAA GCAGCATGACCAAGTCTCTAAAATAAGCTCAGAAAGAAGTGGAACTCCAAAAAAACGCAAAGCTCCACCA CCTCCTATCAGTCCTACCCAGTTGAGTGATGTCTCTTCCCCAAGATCAATAACTTCGACTCCACTATCGG GAAAGGAATCGGTATTTTTTGCTGAACCACCCTTCAAGGCTGAGATCAGTTCTATACGAGAAAACAAAGA CAGACTAAGTGACAGTACTACAGGTGCTGATAGCTTATTGGATATAAGTTCTGAAGCTGACCAACAAGAT CTTCTCTCTCTATTGCAAGCAAAAGTTGCTTCCCTTACCTTACACAATAAGGAGTTACAAGATAAATTAC AGGCCAAATCACCCAAGGAGGCGGAAGCAGACCTAAGCTTTGACTCATACCATTCCACCCAAACTGACTT GGGCCCATCCCTGGGAAAACCTGGTGAAACCTCTCCCCCAGACTCCAAATCATCTCCATCTGTCTTAATA CATTCTTTAGGTAAATCCACTACTGACAATGATGTCAGAATTCAGCAACTGCAAGAGATTTTGCAAGATC TACAGAAGAGATTAGAGAGCTCTGAAGCAGAGAGAAAACAGCTACAGGTCGAACTCCAATCCCGAAGGGC AGAACTGGTATGCTTAAACAACACTGAGATTTCAGAGAACAGCTCTGACCTCAGCCAGAAACTTAAAGAA ACTCAGAGCAAATACGAGGAGGCTATGAAAGAAGTCCTTAGTGTGCAGAAGCAGATGAAACTCGGTCTTG TCTCACCTGAAAGCATGGATAATTATTCACATTTCCACGAGCTGAGGGTCACGGAAGAGGAAATAAATGT GCTAAAGCAGGATCTGCAGAATGCATTAGAAGAAAGTGAAAGAAATAAAGAGAAAGTGAGAGAGTTAGAG GAAAAACTGGTAGAGAGGGAGAAAGGTACAGTGATTAAGCCACCTGTGGAAGAGTACGAGGAAATGAAAA GTTCATATTGCTCTGTTATTGAGAATATGAATAAGGAGAAAGCATTTTTGTTTGAGAAATACCAAGAAGC CCAAGAAGAAATCATGAAATTAAAAGACACACTAAAAAGTCAGATGACACAGGAAGCCAGTGATGAAGCT GAGGACATGAAAGAAGCCATGAATAGGATGATAGATGAACTCAATAAACAGGTGAGCGAGCTGTCACAGC TGTACAAAGAAGCCCAGGCTGAGCTGGAGGATTACAGGAAGAGGAAATCTCTAGAGGATGTCACAGCTGA ATATATCCATAAAGCAGAGCATGAGAAACTGATGCAATTGACAAACGTGTCCAGGGCTAAAGCAGAAGAT GCACTGTCTGAAATGAAGTCTCAGTATTCAAAAGTGTTGAATGAGTTGACCCAGCTCAAACAACTGGTGG ATGCACAAAAAGAGAACTCTGTCTCTATCACAGAACATTTGCAAGTGATAACCACGCTGCGGACTGCAGC AAAAGAGATGGAAGAAAAAATAAGCAATCTTAAGGAACACCTTGCAAGCAAGGAAGTGGAAGTAGCAAAG CTGGAGAAACAACTCTTAGAAGAGAAAGCTGCTATGACTGATGCAATGGTACCTCGGTCTTCCTATGAAA AACTCCAGTCATCCTTAGAGAGTGAAGTGAGTGTGTTGGCATCGAAATTAAAGGAATCTGTGAAAGAGAA AGAGAAGGTCCATTCAGAGGTTGTCCAGATTAGAAGTGAGGTCTCACAGGTGAAAAGAGAAAAGGAAAAT ATTCAGACTCTCTTGAAATCCAAAGAGCAAGAAGTAAATGAACTTCTGCAAAAATTCCAGCAAGCTCAGG AAGAACTTGCAGAAATGAAAAGATACGCTGAGAGCTCTTCAAAACTGGAGGAAGATAAAGATAAAAAGAT AAATGAGATGTCGAAGGAAGTCACCAAATTGAAGGAGGCCTTGAACAGCCTCTCCCAGCTCTCCTACTCA ACAAGCTCATCCAAAAGGCAGAGTCAGCAGCTGGAGGCGCTGCAGCAGCAAGTCAAACAGCTCCAGAACC AGCTGGCGGAATGCAAGAAACAACACCAGGAGGTCATATCAGTTTACAGAATGCATCTTCTGTATGCTGT GCAGGGCCAGATGGATGAAGATGTCCAGAAAGTACTGAAGCAAATCCTTACCATGTGTAAAAACCAGTCT CAAAAGAAGTAA
Translation (983 aa):
MQPTYLPWLSAKEKKTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVE CLRVMITHGVDVTAQDTTGHSALHLAAKNSHHECIRKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQI LCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHGADVNSRNKSGRTALMLACEIGSSNAVEALIKK GADLNLVDSLGYNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPP PPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQD LLSLLQAKVASLTLHNKELQDKLQAKSPKEAEADLSFDSYHSTQTDLGPSLGKPGETSPPDSKSSPSVLI HSLGKSTTDNDVRIQQLQEILQDLQKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLKE TQSKYEEAMKEVLSVQKQMKLGLVSPESMDNYSHFHELRVTEEEINVLKQDLQNALEESERNKEKVRELE EKLVEREKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEA EDMKEAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEDVTAEYIHKAEHEKLMQLTNVSRAKAED ALSEMKSQYSKVLNELTQLKQLVDAQKENSVSITEHLQVITTLRTAAKEMEEKISNLKEHLASKEVEVAK LEKQLLEEKAAMTDAMVPRSSYEKLQSSLESEVSVLASKLKESVKEKEKVHSEVVQIRSEVSQVKREKEN IQTLLKSKEQEVNELLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLSQLSYS TSSSKRQSQQLEALQQQVKQLQNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILTMCKNQS QKK

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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