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Report for CCDS8294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8294.1 Public Homo sapiens 11 C11orf54 24 110 108 CCDS HistoryNCBI Gene:28970Re-query CCDS DB by CCDS ID:8294.1Re-query CCDS DB by GeneID:28970See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8294.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000528288.5 ENSP00000433721.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528288.5Link to Ensembl Protein Viewer:ENSP00000433721.1Re-query CCDS DB by Nucleotide ID:ENST00000528288Re-query CCDS DB by Protein ID:ENSP00000433721
Original member Current member NCBI NM_001351991.2 NP_001338920.1 Accepted alive Link to Nucleotide Sequence:NM_001351991.2Link to Protein Sequence:NP_001338920.1Re-query CCDS DB by Nucleotide ID:NM_001351991Re-query CCDS DB by Protein ID:NP_001338920Link to BLAST:NP_001338920.1
Original member Current member NCBI NM_014039.4 NP_054758.2 Accepted alive Link to Nucleotide Sequence:NM_014039.4Link to Protein Sequence:NP_054758.2Re-query CCDS DB by Nucleotide ID:NM_014039Re-query CCDS DB by Protein ID:NP_054758Link to BLAST:NP_054758.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338920.1 265 Q9H0W9-3 265 100% 0 0
NP_054758.2 265 Q9H0W9-3 265 100% 0 0

Chromosomal Locations for CCDS 8294.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 93747394 93747448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93750346 93750444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93753682 93753755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93753936 93754037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93755210 93755386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93759742 93759858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 93761515 93761688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (798 nt):
ATGGCTTGTGCTGAGTTTTCTTTTCATGTACCAAGTCTTGAAGAGCTTGCTGGAGTTATGCAGAAGGGGT
TAAAAGATAACTTTGCTGATGTCCAGGTCTCTGTAGTTGATTGCCCTGATTTGACTAAGGAACCCTTTAC
CTTTCCTGTAAAAGGCATCTGTGGGAAAACTAGAATTGCAGAAGTTGGAGGTGTGCCTTACTTATTGCCT
CTTGTAAACCAAAAAAAAGTTTATGATCTGAATAAAATTGCAAAAGAAATCAAGCTGCCTGGAGCCTTTA
TTCTTGGAGCAGGAGCAGGTCCATTTCAGACTCTCGGGTTCAATTCTGAGTTTATGCCAGTTATTCAGAC
AGAAAGTGAACACAAGCCTCCTGTAAATGGAAGTTACTTTGCCCATGTGAACCCTGCAGATGGAGGGTGC
CTACTGGAGAAATACAGTGAGAAATGTCATGATTTTCAGTGTGCATTACTGGCTAATCTTTTTGCCAGTG
AAGGCCAACCTGGCAAGCCTGCAGAATTTTCTTCCTGCCCCTTGAACTCTGATGAAGAAGTGAATAAATG
GTTGCATTTTTATGAAATGAAAGCTCCTTTGGTTTGTCTACCAGTTTTTGTCTCCAGAGACCCAGGGTTT
GATTTGCGACTGGAGCACACTCATTTTTTTAGTCGTCATGGAGAAGGTGGACACTACCATTATGACACTA
CTCCAGATATAGTGGAATATCTTGGATACTTCTTACCTGCAGAGTTTCTCTATCGCATTGATCAACCAAA
AGAGACGCATTCAATTGGGCGAGATTAA

Translation (265 aa):
MACAEFSFHVPSLEELAGVMQKGLKDNFADVQVSVVDCPDLTKEPFTFPVKGICGKTRIAEVGGVPYLLP
LVNQKKVYDLNKIAKEIKLPGAFILGAGAGPFQTLGFNSEFMPVIQTESEHKPPVNGSYFAHVNPADGGC
LLEKYSEKCHDFQCALLANLFASEGQPGKPAEFSSCPLNSDEEVNKWLHFYEMKAPLVCLPVFVSRDPGF
DLRLEHTHFFSRHGEGGHYHYDTTPDIVEYLGYFLPAEFLYRIDQPKETHSIGRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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