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Report for CCDS8410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8410.1 Public Homo sapiens 11 H2AX 24 110 108 CCDS HistoryNCBI Gene:3014Re-query CCDS DB by CCDS ID:8410.1Re-query CCDS DB by GeneID:3014See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375167.1 ENSP00000364310.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375167.1Link to Ensembl Protein Viewer:ENSP00000364310.1Re-query CCDS DB by Nucleotide ID:ENST00000375167Re-query CCDS DB by Protein ID:ENSP00000364310
Original member Current member EBI ENST00000530167.2 ENSP00000434024.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000530167.2Link to Ensembl Protein Viewer:ENSP00000434024.1Re-query CCDS DB by Nucleotide ID:ENST00000530167Re-query CCDS DB by Protein ID:ENSP00000434024
Original member Current member NCBI NM_002105.3 NP_002096.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002105.3Link to Protein Sequence:NP_002096.1Re-query CCDS DB by Nucleotide ID:NM_002105Re-query CCDS DB by Protein ID:NP_002096Link to BLAST:NP_002096.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002096.1 143 P16104 143 100% 0 0

Chromosomal Locations for CCDS 8410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119094963 119095394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGTCGGGCCGCGGCAAGACTGGCGGCAAGGCCCGCGCCAAGGCCAAGTCGCGCTCGTCGCGCGCCGGCC
TCCAGTTCCCAGTGGGCCGTGTACACCGGCTGCTGCGGAAGGGCCACTACGCCGAGCGCGTTGGCGCCGG
CGCGCCAGTGTACCTGGCGGCAGTGCTGGAGTACCTCACCGCTGAGATCCTGGAGCTGGCGGGCAATGCG
GCCCGCGACAACAAGAAGACGCGAATCATCCCCCGCCACCTGCAGCTGGCCATCCGCAACGACGAGGAGC
TCAACAAGCTGCTGGGCGGCGTGACGATCGCCCAGGGAGGCGTCCTGCCCAACATCCAGGCCGTGCTGCT
GCCCAAGAAGACCAGCGCCACCGTGGGGCCGAAGGCGCCCTCGGGCGGCAAGAAGGCCACCCAGGCCTCC
CAGGAGTACTAA

Translation (143 aa):
MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNA
ARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTSATVGPKAPSGGKKATQAS
QEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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