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Report for CCDS34538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34538.1 Public Homo sapiens 6 L3MBTL3 24 110 108 CCDS HistoryNCBI Gene:84456Re-query CCDS DB by CCDS ID:34538.1Re-query CCDS DB by GeneID:84456See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34538.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368139.6 ENSP00000357121.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368139.6Link to Ensembl Protein Viewer:ENSP00000357121.2Re-query CCDS DB by Nucleotide ID:ENST00000368139Re-query CCDS DB by Protein ID:ENSP00000357121
Original member Current member EBI ENST00000526019.5 ENSP00000436706.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000526019.5Link to Ensembl Protein Viewer:ENSP00000436706.1Re-query CCDS DB by Nucleotide ID:ENST00000526019Re-query CCDS DB by Protein ID:ENSP00000436706
Original member Current member EBI ENST00000533560.5 ENSP00000437185.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533560.5Link to Ensembl Protein Viewer:ENSP00000437185.1Re-query CCDS DB by Nucleotide ID:ENST00000533560Re-query CCDS DB by Protein ID:ENSP00000437185
Original member Current member NCBI NM_001007102.4 NP_001007103.1 Accepted alive Link to Nucleotide Sequence:NM_001007102.4Link to Protein Sequence:NP_001007103.1Re-query CCDS DB by Nucleotide ID:NM_001007102Re-query CCDS DB by Protein ID:NP_001007103Link to BLAST:NP_001007103.1
Original member Current member NCBI NM_001346550.2 NP_001333479.1 Accepted alive Link to Nucleotide Sequence:NM_001346550.2Link to Protein Sequence:NP_001333479.1Re-query CCDS DB by Nucleotide ID:NM_001346550Re-query CCDS DB by Protein ID:NP_001333479Link to BLAST:NP_001333479.1
Original member Current member NCBI NM_001346551.2 NP_001333480.1 Accepted alive Link to Nucleotide Sequence:NM_001346551.2Link to Protein Sequence:NP_001333480.1Re-query CCDS DB by Nucleotide ID:NM_001346551Re-query CCDS DB by Protein ID:NP_001333480Link to BLAST:NP_001333480.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007103.1 755 Q96JM7-2 755 100% 0 0
NP_001333479.1 755 Q96JM7-2 755 100% 0 0
NP_001333480.1 755 Q96JM7-2 755 100% 0 0

Chromosomal Locations for CCDS 34538.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 130042700 130042801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130049282 130049393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130051249 130051408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130052859 130052991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130055171 130055255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130057406 130057497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130060036 130060140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130066353 130066488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130068330 130068421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130070976 130071127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130078558 130078634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130083620 130083705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130086140 130086250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130092745 130092859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130094265 130094367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130104426 130104575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130120879 130120958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130133452 130133621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130133843 130133905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130139610 130139753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2268 nt):
ATGACTGAATCTGCCTCTAGCACAAGTGGTCAAGAGTTTGATGTGTTCAGTGTTATGGACTGGAAAGATG
GAGTGGGCACGTTACCAGGAAGTGACTTAAAGTTTCGGGTAAATGAGTTTGGAGCCCTGGAAGTTATTAC
AGATGAGAATGAGATGGAAAATGTTAAAAAAGCAACTGCTACCACCACTTGGATGGTACCAACTGCTCAA
GAAGTCTTTTCAGAGAAGACTGGGATGCCTTTCAGGTTGAAGGATCCAGTGAAAGTAGAAGGGCTTCAGT
TCTGTGAGAACTGTTGTCAGTATGGCAACGTAGATGAGTGTCTTTCTGGAGGAAACTATTGCAGCCAGAA
TTGTGCTCGGCACATCAAAGATAAAGATCAGAAGGAAGAAAGGGACGTAGAAGAAGACAATGAGGAAGAA
GATCCTAAGTGTAGTCGGAAGAAAAAACCAAAATTATCTCTGAAAGCTGACACCAAGGAGGATGGAGAAG
AGAGAGATGATGAAATGGAGAACAAACAAGATGTAAGAATCCTGAGGGGTTCGCAGAGAGCACGGAGGAA
AAGACGAGGGGATTCGGCTGTACTAAAGCAGGGTTTGCCTCCTAAAGGAAAGAAAGCGTGGTGCTGGGCA
TCCTACCTGGAAGAGGAGAAAGCGGTGGCAGTGCCGGCGAAGCTGTTCAAGGAGCATCAATCCTTTCCAT
ATAACAAAAATGGATTCAAAGTTGGCATGAAATTAGAAGGCGTGGATCCTGAGCATCAGTCTGTGTACTG
TGTCCTCACCGTCGCGGAGGTTTGTGGATACCGGATAAAGCTTCACTTTGATGGGTATTCTGATTGCTAT
GACTTCTGGGTGAATGCAGACGCTCTGGATATCCACCCAGTTGGGTGGTGTGAGAAAACCGGCCACAAAC
TCCATCCTCCAAAAGGGTATAAAGAAGAAGAATTCAATTGGCAGACCTATCTTAAGACATGTAAAGCTCA
AGCTGCTCCTAAGTCATTATTTGAAAATCAGAATATAACAGTGATCCCATCGGGCTTTCGAGTTGGTATG
AAGCTTGAGGCAGTAGACAAAAAGAATCCCTCATTCATCTGTGTTGCTACGGTAACAGATATGGTGGACA
ATCGTTTCCTGGTACATTTTGACAACTGGGATGAGAGCTATGACTATTGGTGTGAAGCATCAAGTCCACA
TATTCATCCAGTTGGTTGGTGTAAGGAACATAGAAGAACCCTTATTACTCCACCAGGTTATCCAAATGTG
AAACATTTTTCTTGGGATAAATACTTAGAAGAAACCAATTCTTTACCTGCTCCTGCAAGAGCTTTCAAAG
TGAAACCTCCTCATGGATTCCAGAAAAAAATGAAGCTTGAGGTTGTAGACAAAAGGAACCCTATGTTTAT
TAGAGTAGCAACTGTGGCAGACACAGATGATCACCGGGTAAAAGTTCACTTTGATGGCTGGAACAATTGC
TATGATTACTGGATAGATGCAGATTCTCCTGATATTCACCCTGTAGGCTGGTGTTCAAAAACAGGACATC
CCCTTCAGCCTCCTTTGAGCCCCTTAGAATTAATGGAAGCTTCAGAACATGGTGGATGCTCAACCCCGGG
ATGTAAAGGGATTGGCCATTTCAAGAGAGCGAGACATCTGGGCCCTCACAGTGCTGCCAACTGTCCCTAT
TCAGAAATCAATTTGAATAAAGACCGTATTTTTCCAGACCGCTTAAGTGGTGAGATGCCTCCGGCTAGTC
CGTCATTTCCAAGAAATAAAAGGACAGATGCAAATGAAAGCTCTTCTTCCCCTGAAATCAGAGACCAGCA
TGCTGATGATGTCAAAGAAGACTTTGAAGAGAGAACAGAAAGTGAAATGAGAACATCACATGAAGCCAGA
GGTGCCCGGGAAGAACCCACCGTCCAGCAGGCACAGCGTCGGTCAGCTGTCTTTCTGTCCTTTAAGTCCC
CAATTCCATGTCTGCCCTTGCGCTGGGAGCAGCAAAGCAAACTTCTTCCAACTGTCGCAGGAATCCCTGC
CAGTAAAGTTTCCAAATGGAGCACAGACGAGGTGTCAGAATTTATACAGAGCTTACCTGGGTGTGAAGAA
CATGGAAAGGTATTTAAAGATGAACAAATTGATGGAGAAGCATTTCTACTTATGACTCAAACAGACATTG
TTAAAATTATGAGCATTAAACTGGGCCCTGCTCTCAAAATTTTCAATTCCATCCTGATGTTCAAAGCTGC
AGAGAAGAATTCTCACAATGAACTTTGA

Translation (755 aa):
MTESASSTSGQEFDVFSVMDWKDGVGTLPGSDLKFRVNEFGALEVITDENEMENVKKATATTTWMVPTAQ
EVFSEKTGMPFRLKDPVKVEGLQFCENCCQYGNVDECLSGGNYCSQNCARHIKDKDQKEERDVEEDNEEE
DPKCSRKKKPKLSLKADTKEDGEERDDEMENKQDVRILRGSQRARRKRRGDSAVLKQGLPPKGKKAWCWA
SYLEEEKAVAVPAKLFKEHQSFPYNKNGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCY
DFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSGFRVGM
KLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNV
KHFSWDKYLEETNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNC
YDYWIDADSPDIHPVGWCSKTGHPLQPPLSPLELMEASEHGGCSTPGCKGIGHFKRARHLGPHSAANCPY
SEINLNKDRIFPDRLSGEMPPASPSFPRNKRTDANESSSSPEIRDQHADDVKEDFEERTESEMRTSHEAR
GAREEPTVQQAQRRSAVFLSFKSPIPCLPLRWEQQSKLLPTVAGIPASKVSKWSTDEVSEFIQSLPGCEE
HGKVFKDEQIDGEAFLLMTQTDIVKIMSIKLGPALKIFNSILMFKAAEKNSHNEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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