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Report for CCDS55514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55514.1 Public Homo sapiens X MCF2 24 110 108 CCDS HistoryNCBI Gene:4168Re-query CCDS DB by CCDS ID:55514.1Re-query CCDS DB by GeneID:4168See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55514.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536274.5 ENSP00000438155.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536274.5Link to Ensembl Protein Viewer:ENSP00000438155.1Re-query CCDS DB by Nucleotide ID:ENST00000536274Re-query CCDS DB by Protein ID:ENSP00000438155
Original member Current member NCBI NM_001171877.2 NP_001165348.1 Accepted alive Link to Nucleotide Sequence:NM_001171877.2Link to Protein Sequence:NP_001165348.1Re-query CCDS DB by Nucleotide ID:NM_001171877Re-query CCDS DB by Protein ID:NP_001165348Link to BLAST:NP_001165348.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165348.1 821 P10911-6 821 100% 0 0

Chromosomal Locations for CCDS 55514.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 139582443 139582503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139587716 139587788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139588360 139588438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139589835 139589927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139596549 139596770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139597460 139597585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139598406 139598498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139602406 139602498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139604681 139604750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139604869 139604984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139605713 139605779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139607691 139607779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139610301 139610338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139614881 139615052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139616282 139616473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139617513 139617704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139619587 139619706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139626193 139626307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139626623 139626756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139629695 139629844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139632335 139632454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 139642468 139642518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2466 nt):
ATGGCAGAAGCAAATCCCCGGAGAGGCAAGATGAGGTTCAGAAGGAATGCGGCTTCCTTCCCTGGGAACT
TGCACTTGGTTTTGGTTTTACGTCCTACCAGCTTTCTTCAACGAACGTTCACAGACATTGGATTTTGGTT
TAGTCAGGAGGATTTTATGCTTAAATTACCAGCTATAGAAAATTTTGCCCTCACAGTGAAAGAAATGGCT
CAGATGTTACAGTCCTTTGGAACTGAACTGGCTGAGACAGAACTACCAGATGATATTCCCTCAATAGAAG
AAATTCTGGCAATTCGTGCTGAAAGGTATCATCTGTTGAAGAATGATATTACAGCTGTAACCAAAGAAGG
AAAAATTCTGCTAACAAATCTGGAAGTGCCTGACACTGAAGGAGCTGTCAGTTCAAGACTAGAATGTCAT
CGGCAAATAAGTGGTGACTGGCAAACTATTAATAAGTTGCTGACTCAAGTACATGATATGGAAACAGCTT
TTGATGGATTTTGGGAAAAACATCAATTAAAAATGGAGCAGTATCTGCAACTATGGAAGTTTGAGCAGGA
TTTTCAACAGCTTGTGACTGAAGTTGAATTTCTATTAAACCAACAAGCAGAACTGGCTGATGTAACAGGG
ACTATAGCTCAAGTAAAACAAAAAATAAAAAAATTGGAAAACTTAGATGAAAATTCTCAGGAGCTATTAT
CAAAGGCCCAGTTTGTGATATTACATGGACACAAGCTTGCAGCAAATCACCATTATGCACTTGATTTAAT
CTGCCAGAGGTGCAATGAGCTACGTTACCTTTCTGATATTTTGGTTAATGAGATAAAAGCAAAACGGATA
CAACTCAGCAGGACCTTCAAAATGCATAAACTCCTACAGCAGGCTCGTCAATGCTGTGATGAAGGGGAAT
GTCTTCTAGCTAATCAGGAAATAGATAAGTTTCAGTCTAAAGAAGATGCTCAGAAAGCTCTCCAAGACAT
TGAAAATTTTCTTGAAATGGCTCTACCCTTTATAAATTATGAACCTGAAACACTGCAGTATGAATTTGAT
GTAATATTATCTCCTGAGCTTAAGGTTCAAATGAAGACTATACAACTCAAGCTTGAAAACATTCGAAGTA
TATTTGAGAACCAGCAGGCTGGTTTCAGGAACCTGGCAGATAAGCATGTGAGGCCAATCCAATTTGTGGT
ACCCACACCTGAAAATTTGGTCACATCTGGGACACCATTTTTTTCATCTAAACAAGGGAAGAAGACTTGG
AGACAAAATCAGAGCAACTTAAAAATTGAAGTGGTGCCTGATTGTCAGGAGAAGAGAAGTTCTGGTCCAT
CCTCCAGTTTGGACAATGGCAATAGCTTGGATGTTTTAAAGAACCACGTACTAAATGAACTGATACAGAC
TGAGAGAGTTTATGTTCGAGAACTGTATACTGTTTTGTTGGGTTATAGAGCGGAGATGGATAATCCAGAG
ATGTTTGATCTTATGCCACCTCTCCTGAGAAATAAAAAGGACATTCTCTTTGGAAACATGGCAGAAATAT
ATGAATTCCATAACGACATTTTCTTGAGCAGCCTGGAAAATTGTGCTCATGCTCCAGAAAGAGTGGGACC
TTGTTTCCTGGAAAGGAAGGATGATTTTCAGATGTATGCAAAATATTGTCAGAATAAGCCCAGATCAGAA
ACAATTTGGAGGAAGTATTCAGAATGCGCATTTTTCCAGGAATGTCAAAGAAAGTTAAAACACAGACTTA
GACTGGATTCCTATTTACTCAAACCAGTGCAACGAATCACTAAATATCAGTTATTGTTGAAGGAGCTATT
AAAATATAGCAAAGACTGTGAAGGATCTGCTCTGTTGAAGAAGGCACTCGATGCAATGCTGGATTTACTG
AAGTCAGTTAATGATTCTATGCATCAGATTGCAATAAATGGCTATATTGGAAACTTAAATGAACTGGGCA
AGATGATAATGCAAGGTGGATTCAGCGTTTGGATAGGGCACAAGAAAGGTGCTACAAAAATGAAGGATTT
GGCTAGATTCAAACCAATGCAGCGACACCTTTTCTTGTATGAAAAAGCCATTGTTTTTTGCAAAAGGCGT
GTTGAAAGTGGAGAAGGCTCTGACAGATACCCGTCATACAGTTTTAAACACTGTTGGAAAATGGATGAAG
TTGGAATCACTGAATATGTAAAAGGTGATAACCGCAAGTTTGAAATCTGGTATGGTGAAAAGGAAGAAGT
TTATATTGTCCAGGCTTCTAATGTAGATGTGAAGATGACGTGGCTAAAAGAAATAAGAAATATTTTGTTG
AAGCAGCAGGAACTTTTGACAGTTAAAAAAAGAAAGCAACAGGATCAATTAACAGAACGGGATAAGTTTC
AGATTTCTCTTCAGCAGAATGATGAAGACCTGTGTCGGAGATGGCTCTCCTATATTGATGAAGCTACTAT
GTCAAATGGCAAGTAG

Translation (821 aa):
MAEANPRRGKMRFRRNAASFPGNLHLVLVLRPTSFLQRTFTDIGFWFSQEDFMLKLPAIENFALTVKEMA
QMLQSFGTELAETELPDDIPSIEEILAIRAERYHLLKNDITAVTKEGKILLTNLEVPDTEGAVSSRLECH
RQISGDWQTINKLLTQVHDMETAFDGFWEKHQLKMEQYLQLWKFEQDFQQLVTEVEFLLNQQAELADVTG
TIAQVKQKIKKLENLDENSQELLSKAQFVILHGHKLAANHHYALDLICQRCNELRYLSDILVNEIKAKRI
QLSRTFKMHKLLQQARQCCDEGECLLANQEIDKFQSKEDAQKALQDIENFLEMALPFINYEPETLQYEFD
VILSPELKVQMKTIQLKLENIRSIFENQQAGFRNLADKHVRPIQFVVPTPENLVTSGTPFFSSKQGKKTW
RQNQSNLKIEVVPDCQEKRSSGPSSSLDNGNSLDVLKNHVLNELIQTERVYVRELYTVLLGYRAEMDNPE
MFDLMPPLLRNKKDILFGNMAEIYEFHNDIFLSSLENCAHAPERVGPCFLERKDDFQMYAKYCQNKPRSE
TIWRKYSECAFFQECQRKLKHRLRLDSYLLKPVQRITKYQLLLKELLKYSKDCEGSALLKKALDAMLDLL
KSVNDSMHQIAINGYIGNLNELGKMIMQGGFSVWIGHKKGATKMKDLARFKPMQRHLFLYEKAIVFCKRR
VESGEGSDRYPSYSFKHCWKMDEVGITEYVKGDNRKFEIWYGEKEEVYIVQASNVDVKMTWLKEIRNILL
KQQELLTVKKRKQQDQLTERDKFQISLQQNDEDLCRRWLSYIDEATMSNGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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