NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55687.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55687.1 Public Homo sapiens 1 PACC1 24 110 108 CCDS HistoryNCBI Gene:55248Re-query CCDS DB by CCDS ID:55687.1Re-query CCDS DB by GeneID:55248See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55687.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000535273.2 ENSP00000438863.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535273.2Link to Ensembl Protein Viewer:ENSP00000438863.1Re-query CCDS DB by Nucleotide ID:ENST00000535273Re-query CCDS DB by Protein ID:ENSP00000438863
Original member Current member NCBI NM_001198862.2 NP_001185791.1 Accepted alive Link to Nucleotide Sequence:NM_001198862.2Link to Protein Sequence:NP_001185791.1Re-query CCDS DB by Nucleotide ID:NM_001198862Re-query CCDS DB by Protein ID:NP_001185791Link to BLAST:NP_001185791.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185791.1 411 Q9H813-2 411 100% 0 0

Chromosomal Locations for CCDS 55687.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 212365215 212365376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212375193 212375300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212377562 212377706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212379895 212380037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212385274 212385425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212386891 212387100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212410425 212410521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212413898 212414080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 212414722 212414757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGATCCGGCAGGAGCGCTCCACATCCTACCAGGAGGCTGTGCGTCCAGCGCTTCCTTCAAGCAAGCCCT
GCCTCCTCACTTCTCCAGCTGTATTAGTGAAACTGCTCTCCTCCTCCGCCTCCACTTCTCGGCCCCCAAA
CCTTGGTCATCTTTGGCAACCGTCCTCTTCTGTGCCCCTCCATCGTGCCGCCTCATTGGCCAAAGTCAGG
CAGTTCCAGCTGAGTGAGGAGTTGGTCCAGGTGGTTGAGAACTCAGAGCTGGCAGACGAGCAGGACAAGG
AGACGGTCAGAGTCCAAGGTCCGGGTATCTTACCAGGCCTGGACAGCGAGTCCGCCTCCAGCAGCATCCG
CTTCAGCAAGGCCTGCCTGAAGAACGTCTTCTCGGTCCTACTCATCTTCATCTACCTGCTGCTCATGGCT
GTGGCCGTCTTCCTGGTCTACCGGACCATCACAGACTTTCGTGAGAAACTCAAGCACCCTGTCATGTCTG
TGTCTTACAAGGAAGTGGATCGCTATGATGCCCCAGGTATTGCCTTGTACCCCGGTCAGGCCCAGTTGCT
CAGCTGTAAGCACCATTACGAGGTCATTCCTCCTCTGACAAGCCCTGGCCAGCCGGGTGACATGAATTGC
ACCACCCAGAGGATCAACTACACGGACCCCTTCTCCAATCAGACTGTGAAATCTGCCCTGATTGTCCAGG
GGCCCCGGGAAGTGAAAAAGCGGGAGCTGGTCTTCCTCCAGTTCCGCCTGAACAAGAGTAGTGAGGACTT
CAGCGCCATTGATTACCTCCTCTTCTCTTCTTTCCAGGAGTTCCTGCAAAGCCCAAACAGGGTAGGCTTC
ATGCAGGCCTGTGAGAGTGCCTATTCCAGCTGGAAGTTCTCTGGGGGCTTCCGCACCTGGGTCAAGATGT
CACTGGTAAAGACCAAGGAGGAGGATGGGCGGGAAGCAGTGGAGTTCCGGCAGGAGACAAGTGTGGTTAA
CTACATTGACCAGAGGCCAGCTGCCAAAAAAAGTGCTCAATTGTTTTTTGTGGTCTTTGAATGGAAAGAT
CCTTTCATCCAGAAAGTCCAAGATATAGTCACTGCCAATCCTTGGAACACAATTGCTCTTCTCTGTGGCG
CCTTCTTGGCATTATTTAAAGCAGCAGAGTTTGCCAAACTGAGTATAAAATGGATGATCAAAATTAGAAA
GAGATACCTTAAAAGAAGAGGTCAGGCAACGAGCCACATAAGCTGA

Translation (411 aa):
MIRQERSTSYQEAVRPALPSSKPCLLTSPAVLVKLLSSSASTSRPPNLGHLWQPSSSVPLHRAASLAKVR
QFQLSEELVQVVENSELADEQDKETVRVQGPGILPGLDSESASSSIRFSKACLKNVFSVLLIFIYLLLMA
VAVFLVYRTITDFREKLKHPVMSVSYKEVDRYDAPGIALYPGQAQLLSCKHHYEVIPPLTSPGQPGDMNC
TTQRINYTDPFSNQTVKSALIVQGPREVKKRELVFLQFRLNKSSEDFSAIDYLLFSSFQEFLQSPNRVGF
MQACESAYSSWKFSGGFRTWVKMSLVKTKEEDGREAVEFRQETSVVNYIDQRPAAKKSAQLFFVVFEWKD
PFIQKVQDIVTANPWNTIALLCGAFLALFKAAEFAKLSIKWMIKIRKRYLKRRGQATSHIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH