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Report for CCDS10002.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10002.2 Public Homo sapiens 14 BTBD6 24 110 108 CCDS HistoryNCBI Gene:90135Re-query CCDS DB by CCDS ID:10002.2Re-query CCDS DB by GeneID:90135See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 10002.1
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended N-terminus that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 10002.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536364.6 ENSP00000443091.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536364.6Link to Ensembl Protein Viewer:ENSP00000443091.1Re-query CCDS DB by Nucleotide ID:ENST00000536364Re-query CCDS DB by Protein ID:ENSP00000443091
Original member Current member NCBI NM_033271.3 NP_150374.2 Accepted alive Link to Nucleotide Sequence:NM_033271.3Link to Protein Sequence:NP_150374.2Re-query CCDS DB by Nucleotide ID:NM_033271Re-query CCDS DB by Protein ID:NP_150374Link to BLAST:NP_150374.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_150374.2 485 Q96KE9-1 485 100% 0 0

Chromosomal Locations for CCDS 10002.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 105248871 105249085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105249157 105249247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105249360 105249478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 105249640 105250672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGCGGCGGAACTCTACGCTCCCGCCAGCGCCGCGGCCGCGGACCTAGCCAACAGCAACGCCGGCGCCG
CCGTGGGCAGGAAGGCCGGGCCGCGCAGCCCGCCCAGCGCCCCCGCGCCAGCGCCGCCGCCGCCCGCGCC
CGCGCCGCCCACACTCGGCAACAACCACCAGGAGAGCCCCGGCTGGCGGTGCTGCCGCCCCACGCTGCGC
GAGAGGAACGCGCTCATGTTCAACAACGAGCTCATGGCCGACGTGCACTTCGTCGTGGGGCCCCCGGGGG
CGACCAGGACGGTGCCCGCCCACAAGTACGTCTTGGCTGTCGGCAGCTCCGTCTTCTATGCCATGTTCTA
CGGAGACCTGGCGGAAGTCAAATCTGAAATTCACATTCCAGACGTGGAGCCCGCAGCCTTTCTGATCCTC
TTAAAGTACATGTACAGTGATGAGATCGATCTGGAAGCCGACACGGTGCTGGCCACTCTGTACGCTGCTA
AGAAGTACATCGTCCCAGCATTGGCAAAAGCCTGTGTCAACTTTCTGGAGACAAGTTTGGAAGCCAAGAA
CGCCTGCGTCCTGCTGTCCCAGAGCCGGCTGTTTGAGGAGCCCGAGCTGACGCAGCGCTGCTGGGAGGTC
ATTGACGCACAGGCCGAGATGGCCCTACGGTCCGAAGGCTTCTGTGAGATAGACCGGCAGACGCTGGAGA
TCATTGTCACTCGGGAGGCCCTCAACACCAAAGAGGCGGTGGTCTTCGAGGCCGTCCTGAACTGGGCCGA
GGCGGAGTGCAAGAGGCAGGGGCTGCCAATCACCCCACGAAACAAGAGGCATGTTCTGGGGCGAGCCCTC
TATCTGGTCCGAATTCCAACCATGACCCTAGAGGAGTTTGCCAACGGCGCTGCCCAGTCAGACATCCTGA
CTCTGGAGGAGACCCACAGCATCTTCCTGTGGTACACGGCCACCAACAAGCCCCGCCTGGACTTTCCCCT
GACCAAGAGGAAGGGCCTCGCCCCGCAGAGGTGCCACCGATTCCAGTCTTCTGCCTACCGCAGCAACCAG
TGGCGGTACCGCGGGCGCTGCGACAGCATCCAGTTTGCAGTGGACAGAAGGGTATTTATTGCAGGGCTGG
GCCTGTATGGCTCCAGCTCTGGGAAGGCTGAGTACAGCGTGAAGATTGAGCTCAAGCGGCTCGGGGTGGT
TCTGGCTCAGAACTTGACCAAGTTCATGTCAGACGGATCCAGTAACACCTTCCCGGTCTGGTTTGAACAC
CCGGTCCAGGTTGAACAAGACACCTTCTACACGGCCAGTGCCGTCCTGGACGGCAGCGAACTCAGCTACT
TTGGGCAGGAGGGGATGACGGAAGTGCAGTGTGGAAAGGTGGCCTTCCAGTTCCAGTGCTCCTCGGACAG
CACCAACGGGACTGGGGTCCAGGGTGGGCAGATCCCTGAGCTCATTTTCTATGCCTGA

Translation (485 aa):
MAAELYAPASAAAADLANSNAGAAVGRKAGPRSPPSAPAPAPPPPAPAPPTLGNNHQESPGWRCCRPTLR
ERNALMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLIL
LKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSLEAKNACVLLSQSRLFEEPELTQRCWEV
IDAQAEMALRSEGFCEIDRQTLEIIVTREALNTKEAVVFEAVLNWAEAECKRQGLPITPRNKRHVLGRAL
YLVRIPTMTLEEFANGAAQSDILTLEETHSIFLWYTATNKPRLDFPLTKRKGLAPQRCHRFQSSAYRSNQ
WRYRGRCDSIQFAVDRRVFIAGLGLYGSSSGKAEYSVKIELKRLGVVLAQNLTKFMSDGSSNTFPVWFEH
PVQVEQDTFYTASAVLDGSELSYFGQEGMTEVQCGKVAFQFQCSSDSTNGTGVQGGQIPELIFYA


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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