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Report for CCDS42168.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42168.1 Public Homo sapiens 16 PSME3IP1 24 110 108 CCDS HistoryNCBI Gene:80011Re-query CCDS DB by CCDS ID:42168.1Re-query CCDS DB by GeneID:80011See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42168.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309137.13 ENSP00000335808.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309137.13Link to Ensembl Protein Viewer:ENSP00000335808.6Re-query CCDS DB by Nucleotide ID:ENST00000309137Re-query CCDS DB by Protein ID:ENSP00000335808
Original member Current member EBI ENST00000389447.9 ENSP00000374098.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389447.9Link to Ensembl Protein Viewer:ENSP00000374098.5Re-query CCDS DB by Nucleotide ID:ENST00000389447Re-query CCDS DB by Protein ID:ENSP00000374098
Original member Current member EBI ENST00000564108.5 ENSP00000456211.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000564108.5Link to Ensembl Protein Viewer:ENSP00000456211.1Re-query CCDS DB by Nucleotide ID:ENST00000564108Re-query CCDS DB by Protein ID:ENSP00000456211
Original member Current member EBI ENST00000569266.5 ENSP00000457740.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000569266.5Link to Ensembl Protein Viewer:ENSP00000457740.1Re-query CCDS DB by Nucleotide ID:ENST00000569266Re-query CCDS DB by Protein ID:ENSP00000457740
Original member Current member EBI ENST00000567439.5 ENSP00000457850.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000567439.5Link to Ensembl Protein Viewer:ENSP00000457850.1Re-query CCDS DB by Nucleotide ID:ENST00000567439Re-query CCDS DB by Protein ID:ENSP00000457850
Original member Current member NCBI NM_001354078.1 NP_001341007.1 Accepted alive Link to Nucleotide Sequence:NM_001354078.1Link to Protein Sequence:NP_001341007.1Re-query CCDS DB by Nucleotide ID:NM_001354078Re-query CCDS DB by Protein ID:NP_001341007Link to BLAST:NP_001341007.1
Original member Current member NCBI NM_001354079.1 NP_001341008.1 Accepted alive Link to Nucleotide Sequence:NM_001354079.1Link to Protein Sequence:NP_001341008.1Re-query CCDS DB by Nucleotide ID:NM_001354079Re-query CCDS DB by Protein ID:NP_001341008Link to BLAST:NP_001341008.1
Original member Current member NCBI NM_001354080.1 NP_001341009.1 Accepted alive Link to Nucleotide Sequence:NM_001354080.1Link to Protein Sequence:NP_001341009.1Re-query CCDS DB by Nucleotide ID:NM_001354080Re-query CCDS DB by Protein ID:NP_001341009Link to BLAST:NP_001341009.1
Original member Current member NCBI NM_001354081.2 NP_001341010.1 Accepted alive Link to Nucleotide Sequence:NM_001354081.2Link to Protein Sequence:NP_001341010.1Re-query CCDS DB by Nucleotide ID:NM_001354081Re-query CCDS DB by Protein ID:NP_001341010Link to BLAST:NP_001341010.1
Original member Current member NCBI NM_001354082.1 NP_001341011.1 Accepted alive Link to Nucleotide Sequence:NM_001354082.1Link to Protein Sequence:NP_001341011.1Re-query CCDS DB by Nucleotide ID:NM_001354082Re-query CCDS DB by Protein ID:NP_001341011Link to BLAST:NP_001341011.1
Original member Current member NCBI NM_001354083.2 NP_001341012.1 Accepted alive Link to Nucleotide Sequence:NM_001354083.2Link to Protein Sequence:NP_001341012.1Re-query CCDS DB by Nucleotide ID:NM_001354083Re-query CCDS DB by Protein ID:NP_001341012Link to BLAST:NP_001341012.1
Original member Current member NCBI NM_001354084.2 NP_001341013.1 Accepted alive Link to Nucleotide Sequence:NM_001354084.2Link to Protein Sequence:NP_001341013.1Re-query CCDS DB by Nucleotide ID:NM_001354084Re-query CCDS DB by Protein ID:NP_001341013Link to BLAST:NP_001341013.1
Original member Current member NCBI NM_001354085.2 NP_001341014.1 Accepted alive Link to Nucleotide Sequence:NM_001354085.2Link to Protein Sequence:NP_001341014.1Re-query CCDS DB by Nucleotide ID:NM_001354085Re-query CCDS DB by Protein ID:NP_001341014Link to BLAST:NP_001341014.1
Original member Current member NCBI NM_001354086.2 NP_001341015.1 Accepted alive Link to Nucleotide Sequence:NM_001354086.2Link to Protein Sequence:NP_001341015.1Re-query CCDS DB by Nucleotide ID:NM_001354086Re-query CCDS DB by Protein ID:NP_001341015Link to BLAST:NP_001341015.1
Original member Current member NCBI NM_001354087.1 NP_001341016.1 Accepted alive Link to Nucleotide Sequence:NM_001354087.1Link to Protein Sequence:NP_001341016.1Re-query CCDS DB by Nucleotide ID:NM_001354087Re-query CCDS DB by Protein ID:NP_001341016Link to BLAST:NP_001341016.1
Original member Current member NCBI NM_001354088.2 NP_001341017.1 Accepted alive Link to Nucleotide Sequence:NM_001354088.2Link to Protein Sequence:NP_001341017.1Re-query CCDS DB by Nucleotide ID:NM_001354088Re-query CCDS DB by Protein ID:NP_001341017Link to BLAST:NP_001341017.1
Original member Current member NCBI NM_001354089.2 NP_001341018.1 Accepted alive Link to Nucleotide Sequence:NM_001354089.2Link to Protein Sequence:NP_001341018.1Re-query CCDS DB by Nucleotide ID:NM_001354089Re-query CCDS DB by Protein ID:NP_001341018Link to BLAST:NP_001341018.1
Original member Current member NCBI NM_001354090.2 NP_001341019.1 Accepted alive Link to Nucleotide Sequence:NM_001354090.2Link to Protein Sequence:NP_001341019.1Re-query CCDS DB by Nucleotide ID:NM_001354090Re-query CCDS DB by Protein ID:NP_001341019Link to BLAST:NP_001341019.1
Original member Current member NCBI NM_001354091.2 NP_001341020.1 Accepted alive Link to Nucleotide Sequence:NM_001354091.2Link to Protein Sequence:NP_001341020.1Re-query CCDS DB by Nucleotide ID:NM_001354091Re-query CCDS DB by Protein ID:NP_001341020Link to BLAST:NP_001341020.1
Original member Current member NCBI NM_001354092.2 NP_001341021.1 Accepted alive Link to Nucleotide Sequence:NM_001354092.2Link to Protein Sequence:NP_001341021.1Re-query CCDS DB by Nucleotide ID:NM_001354092Re-query CCDS DB by Protein ID:NP_001341021Link to BLAST:NP_001341021.1
Original member Current member NCBI NM_001354094.2 NP_001341023.1 Accepted alive Link to Nucleotide Sequence:NM_001354094.2Link to Protein Sequence:NP_001341023.1Re-query CCDS DB by Nucleotide ID:NM_001354094Re-query CCDS DB by Protein ID:NP_001341023Link to BLAST:NP_001341023.1
Original member Current member NCBI NM_001354095.2 NP_001341024.1 Accepted alive Link to Nucleotide Sequence:NM_001354095.2Link to Protein Sequence:NP_001341024.1Re-query CCDS DB by Nucleotide ID:NM_001354095Re-query CCDS DB by Protein ID:NP_001341024Link to BLAST:NP_001341024.1
Original member Current member NCBI NM_001354096.2 NP_001341025.1 Accepted alive Link to Nucleotide Sequence:NM_001354096.2Link to Protein Sequence:NP_001341025.1Re-query CCDS DB by Nucleotide ID:NM_001354096Re-query CCDS DB by Protein ID:NP_001341025Link to BLAST:NP_001341025.1
Original member Current member NCBI NM_001354097.2 NP_001341026.1 Accepted alive Link to Nucleotide Sequence:NM_001354097.2Link to Protein Sequence:NP_001341026.1Re-query CCDS DB by Nucleotide ID:NM_001354097Re-query CCDS DB by Protein ID:NP_001341026Link to BLAST:NP_001341026.1
Original member Current member NCBI NM_001354099.2 NP_001341028.1 Accepted alive Link to Nucleotide Sequence:NM_001354099.2Link to Protein Sequence:NP_001341028.1Re-query CCDS DB by Nucleotide ID:NM_001354099Re-query CCDS DB by Protein ID:NP_001341028Link to BLAST:NP_001341028.1
Original member Current member NCBI NM_001354100.2 NP_001341029.1 Accepted alive Link to Nucleotide Sequence:NM_001354100.2Link to Protein Sequence:NP_001341029.1Re-query CCDS DB by Nucleotide ID:NM_001354100Re-query CCDS DB by Protein ID:NP_001341029Link to BLAST:NP_001341029.1
Original member Current member NCBI NM_001354101.2 NP_001341030.1 Accepted alive Link to Nucleotide Sequence:NM_001354101.2Link to Protein Sequence:NP_001341030.1Re-query CCDS DB by Nucleotide ID:NM_001354101Re-query CCDS DB by Protein ID:NP_001341030Link to BLAST:NP_001341030.1
Original member Current member NCBI NM_001354102.2 NP_001341031.1 Accepted alive Link to Nucleotide Sequence:NM_001354102.2Link to Protein Sequence:NP_001341031.1Re-query CCDS DB by Nucleotide ID:NM_001354102Re-query CCDS DB by Protein ID:NP_001341031Link to BLAST:NP_001341031.1
Original member Current member NCBI NM_001354103.2 NP_001341032.1 Accepted alive Link to Nucleotide Sequence:NM_001354103.2Link to Protein Sequence:NP_001341032.1Re-query CCDS DB by Nucleotide ID:NM_001354103Re-query CCDS DB by Protein ID:NP_001341032Link to BLAST:NP_001341032.1
Original member Current member NCBI NM_024946.4 NP_079222.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024946.4Link to Protein Sequence:NP_079222.1Re-query CCDS DB by Nucleotide ID:NM_024946Re-query CCDS DB by Protein ID:NP_079222Link to BLAST:NP_079222.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341007.1 254 Q9GZU8 254 100% 0 0
NP_001341008.1 254 Q9GZU8 254 100% 0 0
NP_001341009.1 254 Q9GZU8 254 100% 0 0
NP_001341010.1 254 Q9GZU8 254 100% 0 0
NP_001341011.1 254 Q9GZU8 254 100% 0 0
NP_001341012.1 254 Q9GZU8 254 100% 0 0
NP_001341013.1 254 Q9GZU8 254 100% 0 0
NP_001341014.1 254 Q9GZU8 254 100% 0 0
NP_001341015.1 254 Q9GZU8 254 100% 0 0
NP_001341016.1 254 Q9GZU8 254 100% 0 0
NP_001341017.1 254 Q9GZU8 254 100% 0 0
NP_001341018.1 254 Q9GZU8 254 100% 0 0
NP_001341019.1 254 Q9GZU8 254 100% 0 0
NP_001341020.1 254 Q9GZU8 254 100% 0 0
NP_001341021.1 254 Q9GZU8 254 100% 0 0
NP_001341023.1 254 Q9GZU8 254 100% 0 0
NP_001341024.1 254 Q9GZU8 254 100% 0 0
NP_001341025.1 254 Q9GZU8 254 100% 0 0
NP_001341026.1 254 Q9GZU8 254 100% 0 0
NP_001341028.1 254 Q9GZU8 254 100% 0 0
NP_001341029.1 254 Q9GZU8 254 100% 0 0
NP_001341030.1 254 Q9GZU8 254 100% 0 0
NP_001341031.1 254 Q9GZU8 254 100% 0 0
NP_001341032.1 254 Q9GZU8 254 100% 0 0
NP_079222.1 254 Q9GZU8 254 100% 0 0

Chromosomal Locations for CCDS 42168.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 57154290 57154507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57164001 57164065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57167093 57167226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57172251 57172372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57172776 57172874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 57173728 57173854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGATGGAGGGGATGATGGTAACCTTATTATCAAAAAGAGGTTTGTGTCTGAGGCAGAACTAGATGAAC
GGCGCAAAAGGAGGCAAGAAGAATGGGAGAAAGTTCGAAAACCTGAAGATCCAGAAGAATGTCCAGAGGA
GGTTTATGACCCTCGATCTCTATATGAAAGGCTACAGGAACAGAAGGACAGGAAGCAGCAGGAGTACGAG
GAACAGTTCAAATTCAAAAACATGGTAAGAGGCTTAGATGAAGATGAGACCAACTTCCTTGATGAGGTTT
CTCGACAGCAGGAACTAATAGAAAAGCAACGAAGAGAAGAAGAACTGAAAGAACTGAAGGAATACAGAAA
TAACCTCAAGAAGGTTGGAATTTCTCAAGAGAACAAGAAGGAAGTGGAAAAGAAACTGACTGTGAAGCCT
ATAGAAACCAAGAACAAGTTCTCCCAGGCGAAGCTGTTGGCAGGAGCTGTGAAGCATAAGAGCTCAGAGA
GTGGCAACAGTGTGAAAAGACTGAAACCGGACCCTGAGCCAGATGACAAGAATCAAGAGCCCTCATCCTG
CAAGTCTCTCGGAAACACCTCCCTGAGTGGCCCCTCCATCCACTGCCCCTCTGCTGCAGTATGTATCGGC
ATCCTCCCAGGCCTGGGTGCCTACTCTGGGAGCAGCGACTCCGAGTCCAGCTCAGACAGCGAAGGCACCA
TCAATGCCACCGGAAAGATTGTCTCCTCCATCTTCCGAACCAACACCTTCCTCGAGGCCCCCTAG

Translation (254 aa):
MDGGDDGNLIIKKRFVSEAELDERRKRRQEEWEKVRKPEDPEECPEEVYDPRSLYERLQEQKDRKQQEYE
EQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELKELKEYRNNLKKVGISQENKKEVEKKLTVKP
IETKNKFSQAKLLAGAVKHKSSESGNSVKRLKPDPEPDDKNQEPSSCKSLGNTSLSGPSIHCPSAAVCIG
ILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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