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Report for CCDS59403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
59403.1 Public Homo sapiens 19 PLA2G4C 24 110 108 CCDS HistoryNCBI Gene:8605Re-query CCDS DB by CCDS ID:59403.1Re-query CCDS DB by GeneID:8605See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 12, NCBI annotation release 104, Ensembl annotation release 71

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 59403.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000599111.5 ENSP00000472546.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000599111.5Link to Ensembl Protein Viewer:ENSP00000472546.1Re-query CCDS DB by Nucleotide ID:ENST00000599111Re-query CCDS DB by Protein ID:ENSP00000472546
Original member Current member NCBI NM_001159322.2 NP_001152794.1 Accepted alive Link to Nucleotide Sequence:NM_001159322.2Link to Protein Sequence:NP_001152794.1Re-query CCDS DB by Nucleotide ID:NM_001159322Re-query CCDS DB by Protein ID:NP_001152794Link to BLAST:NP_001152794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152794.1 551 Q9UP65-3 551 100% 0 0

Chromosomal Locations for CCDS 59403.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48048343 48048388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48052997 48053147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48054878 48055049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48061998 48062152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48067791 48067886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48074767 48074874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48077771 48077824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48085059 48085112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48088686 48088712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48090364 48090417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48095464 48095604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48098139 48098259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48099671 48099860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48104588 48104724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48105333 48105413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48106522 48106561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48110487 48110515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGCGCACACGCCCCAGACCCAGGCTCAGGAGGACTGAGAATTTTCTGACCGCAGTGCACCATGGGAAGA
AAGAAGAAAAGGCGGCCGTGGAGAGACGAAGACTTCATGTGCTGAAAGCTCTGAAGAAGCTAAGGATTGA
GGCTGATGAGGCCCCAGTTGTTGCTGTGCTGGGCTCAGGCGGAGGACTGCGGGCTCACATTGCCTGCCTT
GGGGTCCTGAGTGAGATGAAAGAACAGGGCCTGTTGGATGCCGTCACGTACCTCGCAGGGGTCTCTGGAT
CCACTTGGGCAATATCTTCTCTCTACACCAATGATGGTGACATGGAAGCTCTCGAGGCTGACCTGAAACA
TCGATTTACCCGACAGGAGTGGGACTTGGCTAAGAGCCTACAGAAAACCATCCAAGCAGCGAGGTCTGAG
AATTACTCTCTGACCGACTTCTGGGCCTACATGGTTATCTCTAAGCAAACCAGAGAACTGCCGGAGTCTC
ATTTGTCCAATATGAAGAAGCCCGTGGAAGAAGGGACACTACCCTACCCAATATTTGCAGCCATTGACAA
TGACCTGCAACCTTCCTGGCAGGAGGCAAGAGCACCAGAGACCTGGTTCGAGTTCACCCCTCACCACGCT
GGCTTCTCTGCACTGGGGGCCTTTGTTTCCATAACCCACTTCGGAAGCAAATTCAAGAAGGGAAGACTGG
TCAGAACTCACCCTGAGAGAGACCTGACTTTCCTGAGAGGTTTATGGGGAAGTGCTCTTGGTAACACTGA
AGTCATTAGGGAATACATTTTTGACCAGTTAAGGAATCTGACCCTGAAAGGTTTATGGAGAAGGGCTGTT
GCTAATGCTAAAAGCATTGGACACCTTATTTTTGCCCGATTACTGAGGCTGCAAGAAAGTTCACAAGGGG
AACATCCTCCCCCAGAAGATGAAGGCGGTGAGCCTGAACACACCTGGCTGACTGAGATGCTCGAGAATTG
GACCAGGACCTCCCTGGAAAAGCAGGAGCAGCCCCATGAGGACCCCGAAAGGAAAGGCTCACTCAGTAAC
TTGATGGATTTTGTGAAGAAAACAGGCATTTGCGCTTCAAAGTGGGAATGGGGGACCACTCACAACTTCC
TGTACAAACACGGTGGCATCCGGGACAAGATAATGAGCAGCCGGAAGCACCTCCACCTGGTGGATGCTGG
TTTAGCCATCAACACTCCCTTCCCACTCGTGCTGCCCCCGACGCGGGAGGTTCACCTCATCCTCTCCTTC
GACTTCAGTGCCGGAGATCCTTTCGAGACCATCCGGGCTACCACTGACTACTGCCGCCGCCACAAGATCC
CCTTTCCCCAAGTAGAAGAGGCTGAGCTGGATTTGTGGTCCAAGGCCCCCGCCAGCTGCTACATCCTGAA
AGGAGAAACTGGACCAGTGGTGATGCATTTTCCCCTGTTCAACATAGATGCCTGTGGAGGTGATATTGAG
GCATGGAGTGACACATACGACACATTCAAGCTTGCTGACACCTACACTCTAGATGTGGTGGTGCTACTCT
TGGCATTAGCCAAGAAGAATGTCAGGGAAAACAAGAAGAAGATCCTTAGAGAGTTGATGAACGTGGCCGG
GCTCTACTACCCGAAGGATAGTGCCCGAAGTTGCTGCTTGGCATAG

Translation (551 aa):
MRTRPRPRLRRTENFLTAVHHGKKEEKAAVERRRLHVLKALKKLRIEADEAPVVAVLGSGGGLRAHIACL
GVLSEMKEQGLLDAVTYLAGVSGSTWAISSLYTNDGDMEALEADLKHRFTRQEWDLAKSLQKTIQAARSE
NYSLTDFWAYMVISKQTRELPESHLSNMKKPVEEGTLPYPIFAAIDNDLQPSWQEARAPETWFEFTPHHA
GFSALGAFVSITHFGSKFKKGRLVRTHPERDLTFLRGLWGSALGNTEVIREYIFDQLRNLTLKGLWRRAV
ANAKSIGHLIFARLLRLQESSQGEHPPPEDEGGEPEHTWLTEMLENWTRTSLEKQEQPHEDPERKGSLSN
LMDFVKKTGICASKWEWGTTHNFLYKHGGIRDKIMSSRKHLHLVDAGLAINTPFPLVLPPTREVHLILSF
DFSAGDPFETIRATTDYCRRHKIPFPQVEEAELDLWSKAPASCYILKGETGPVVMHFPLFNIDACGGDIE
AWSDTYDTFKLADTYTLDVVVLLLALAKKNVRENKKKILRELMNVAGLYYPKDSARSCCLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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