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Report for CCDS92241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92241.1 Public Homo sapiens 17 SLC16A11 24 110 108 CCDS HistoryNCBI Gene:162515Re-query CCDS DB by CCDS ID:92241.1Re-query CCDS DB by GeneID:162515See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92241.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000673828.2 ENSP00000501313.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673828.2Link to Ensembl Protein Viewer:ENSP00000501313.1Re-query CCDS DB by Nucleotide ID:ENST00000673828Re-query CCDS DB by Protein ID:ENSP00000501313
Original member Current member NCBI NM_001370553.1 NP_001357482.1 Accepted alive Link to Nucleotide Sequence:NM_001370553.1Link to Protein Sequence:NP_001357482.1Re-query CCDS DB by Nucleotide ID:NM_001370553Re-query CCDS DB by Protein ID:NP_001357482Link to BLAST:NP_001357482.1

Chromosomal Locations for CCDS 92241.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7041931 7042763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7042930 7043073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7043312 7043513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGACCCCCCAGCCCGCCGGACCCCCGGATGGGGGCTGGGGCTGGGTGGTGGCGGCCGCAGCCTTCGCGA
TAAACGGGCTGTCCTACGGGCTGCTGCGCTCGCTGGGCCTTGCCTTCCCTGACCTTGCCGAGCACTTTGA
CCGAAGCGCCCAGGACACTGCGTGGATCAGCGCCCTGGCCCTGGCCGTGCAGCAGGCAGCCAGCCCCGTG
GGCAGCGCCCTGAGCACGCGCTGGGGGGCCCGCCCCGTGGTGATGGTTGGGGGCGTCCTCGCCTCGCTGG
GCTTCGTCTTCTCGGCTTTCGCCAGCGATCTGCTGCATCTCTACCTCGGCCTGGGCCTCCTCGCTGGCTT
TGGTTGGGCCCTGGTGTTCGCCCCCGCCCTAGGCACCCTCTCGCGTTACTTCTCCCGCCGTCGAGTCTTG
GCGGTGGGGCTGGCGCTCACCGGCAACGGGGCCTCCTCGCTGCTCCTGGCGCCCGCCTTGCAGCTTCTTC
TCGATACTTTCGGCTGGCGGGGCGCTCTGCTCCTCCTCGGCGCGATCACCCTCCACCTCACCCCCTGTGG
CGCCCTGCTGCTACCCCTGGTCCTTCCTGGAGACCCCCCAGCCCCACCGCGTAGTCCCCTAGCTGCCCTC
GGCCTGAGTCTGTTCACACGCCGGGCCTTCTCAATCTTTGCTCTAGGCACAGCCCTGGTTGGGGGCGGGT
ACTTCGTTCCTTACGTGCACTTGGCTCCCCACGCTTTAGACCGGGGCCTGGGGGGATACGGAGCAGCGCT
GGTGGTGGCCGTGGCTGCGATGGGGGATGCGGGCGCCCGGCTGGTCTGCGGGTGGCTGGCAGACCAAGGC
TGGGTGCCCCTCCCGCGGCTGCTGGCCGTATTCGGGGCTCTGACTGGGCTGGGGCTGTGGGTGGTGGGGC
TGGTGCCCGTGGTGGGCGGCGAAGAGAGCTGGGGGGGTCCCCTGCTGGCCGCGGCTGTGGCCTATGGGCT
GAGCGCGGGGAGTTACGCCCCGCTGGTTTTCGGTGTACTCCCCGGGCTGGTGGGCGTCGGAGGTGTGGTG
CAGGCCACAGGGCTGGTGATGATGCTGATGAGCCTCGGGGGGCTCCTGGGCCCTCCCCTGTCAGGTAAGG
ACCTGAGCTCACAGATCTGCCTACAACTATCCTCTGCCCCTGGGGTTCGAGGCTTCTAA

Translation (392 aa):
MTPQPAGPPDGGWGWVVAAAAFAINGLSYGLLRSLGLAFPDLAEHFDRSAQDTAWISALALAVQQAASPV
GSALSTRWGARPVVMVGGVLASLGFVFSAFASDLLHLYLGLGLLAGFGWALVFAPALGTLSRYFSRRRVL
AVGLALTGNGASSLLLAPALQLLLDTFGWRGALLLLGAITLHLTPCGALLLPLVLPGDPPAPPRSPLAAL
GLSLFTRRAFSIFALGTALVGGGYFVPYVHLAPHALDRGLGGYGAALVVAVAAMGDAGARLVCGWLADQG
WVPLPRLLAVFGALTGLGLWVVGLVPVVGGEESWGGPLLAAAVAYGLSAGSYAPLVFGVLPGLVGVGGVV
QATGLVMMLMSLGGLLGPPLSGKDLSSQICLQLSSAPGVRGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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