NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13098.1 Public Homo sapiens 20 FERMT1 24 110 108 CCDS HistoryNCBI Gene:55612Re-query CCDS DB by CCDS ID:13098.1Re-query CCDS DB by GeneID:55612See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13098.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217289.9 ENSP00000217289.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217289.9Link to Ensembl Protein Viewer:ENSP00000217289.4Re-query CCDS DB by Nucleotide ID:ENST00000217289Re-query CCDS DB by Protein ID:ENSP00000217289
Original member Current member EBI ENST00000699095.1 ENSP00000514127.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000699095.1Link to Ensembl Protein Viewer:ENSP00000514127.1Re-query CCDS DB by Nucleotide ID:ENST00000699095Re-query CCDS DB by Protein ID:ENSP00000514127
Original member Current member NCBI NM_017671.5 NP_060141.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017671.5Link to Protein Sequence:NP_060141.3Re-query CCDS DB by Nucleotide ID:NM_017671Re-query CCDS DB by Protein ID:NP_060141Link to BLAST:NP_060141.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060141.3 677 Q9BQL6-1 677 100% 0 0

Chromosomal Locations for CCDS 13098.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 6077173 6077346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6079436 6079577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6084040 6084164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6085066 6085287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6087777 6087883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6088965 6089089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6094939 6094988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6096902 6097033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6097524 6097631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6107532 6107634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6110298 6110511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6112477 6112623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6115811 6116044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6119404 6119554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2034 nt):
ATGCTGTCATCCACTGACTTTACATTTGCTTCCTGGGAGCTTGTGGTCCGCGTTGACCATCCCAATGAAG
AGCAGCAGAAAGACGTCACACTGAGAGTATCTGGAGACCTTCATGTTGGAGGAGTGATGCTCAAGTTAGT
AGAACAGATCAATATATCCCAAGACTGGTCAGACTTTGCTCTTTGGTGGGAACAGAAGCATTGCTGGCTT
CTGAAAACCCACTGGACCCTGGACAAATATGGGGTCCAGGCAGATGCAAAGCTTCTCTTCACCCCTCAGC
ATAAAATGCTGCGCCTTCGTCTGCCGAATTTGAAGATGGTGAGGTTGCGAGTCAGCTTCTCAGCTGTGGT
TTTTAAAGCTGTCAGTGATATCTGCAAAATCCTGAATATTAGAAGATCAGAAGAGCTTTCCTTGTTAAAG
CCGTCTGGTGACTATTTTAAGAAGAAGAAGAAAAAAGACAAAAATAATAAGGAACCCATAATTGAAGATA
TTCTAAACCTGGAGAGTTCTCCAACAGCTTCAGGTTCATCAGTAAGTCCTGGTTTATACAGTAAAACCAT
GACCCCTATATATGACCCCATCAATGGAACACCAGCATCATCCACCATGACTTGGTTCAGTGACAGCCCT
TTGACGGAACAAAACTGCAGCATCCTCGCATTCAGCCAACCCCCCCAGTCCCCAGAAGCACTTGCGGATA
TGTACCAGCCTCGGTCTCTGGTTGATAAAGCCAAGCTCAATGCAGGTTGGCTAGACTCCTCACGCTCCCT
TATGGAACAAGGCATCCAAGAGGATGAGCAGCTGCTCTTACGATTTAAATATTATTCTTTCTTCGACTTG
AATCCTAAATATGATGCTGTCCGAATAAACCAACTCTATGAGCAAGCCAGGTGGGCCATTCTCTTAGAAG
AAATTGATTGCACAGAGGAAGAAATGTTGATCTTTGCAGCTCTACAGTACCACATTAGCAAACTGTCGTT
GTCTGCTGAAACACAGGATTTTGCAGGCGAGTCCGAGGTTGATGAAATAGAAGCGGCGCTTTCTAATTTG
GAAGTAACCCTAGAAGGTGGAAAAGCGGACAGCCTTTTGGAGGACATTACTGATATCCCTAAACTTGCAG
ATAATCTCAAATTATTTAGGCCCAAGAAGTTACTACCAAAAGCTTTCAAACAATATTGGTTTATCTTTAA
AGACACATCCATAGCATACTTTAAAAATAAGGAACTTGAACAAGGAGAACCACTAGAAAAACTAAATCTT
AGAGGCTGCGAAGTTGTGCCCGATGTAAATGTAGCAGGAAGAAAATTTGGAATCAAGTTACTAATCCCTG
TTGCCGATGGTATGAATGAAATGTATTTGAGATGTGACCATGAGAATCAATACGCCCAATGGATGGCTGC
CTGCATGTTGGCATCGAAGGGCAAAACCATGGCAGACAGCTCCTACCAGCCAGAGGTCCTCAACATCCTT
TCATTTCTGAGGATGAAAAACAGGAACTCTGCATCTCAGGTGGCTTCCAGTCTCGAAAACATGGATATGA
ACCCAGAATGTTTTGTGTCACCACGGTGTGCAAAAAGACACAAATCCAAACAGCTGGCCGCCCGGATCCT
GGAGGCGCACCAGAACGTGGCCCAGATGCCCCTGGTCGAAGCCAAGCTGCGGTTCATCCAGGCGTGGCAG
TCACTGCCTGAGTTTGGCCTCACCTACTACCTTGTCAGATTTAAAGGAAGCAAAAAAGATGACATTCTGG
GAGTTTCATATAACAGGTTGATTAAAATTGATGCAGCCACCGGGATTCCAGTGACAACATGGAGATTCAC
AAATATCAAACAGTGGAATGTAAACTGGGAAACCCGGCAGGTGGTCATCGAGTTTGACCAAAACGTCTTT
ACTGCTTTCACCTGCCTGAGTGCAGATTGCAAGATTGTGCACGAGTACATTGGCGGCTACATTTTCTTGT
CCACCCGCTCCAAGGACCAGAATGAAACACTCGATGAGGACTTGTTCCACAAATTGACCGGCGGTCAGGA
TTGA

Translation (677 aa):
MLSSTDFTFASWELVVRVDHPNEEQQKDVTLRVSGDLHVGGVMLKLVEQINISQDWSDFALWWEQKHCWL
LKTHWTLDKYGVQADAKLLFTPQHKMLRLRLPNLKMVRLRVSFSAVVFKAVSDICKILNIRRSEELSLLK
PSGDYFKKKKKKDKNNKEPIIEDILNLESSPTASGSSVSPGLYSKTMTPIYDPINGTPASSTMTWFSDSP
LTEQNCSILAFSQPPQSPEALADMYQPRSLVDKAKLNAGWLDSSRSLMEQGIQEDEQLLLRFKYYSFFDL
NPKYDAVRINQLYEQARWAILLEEIDCTEEEMLIFAALQYHISKLSLSAETQDFAGESEVDEIEAALSNL
EVTLEGGKADSLLEDITDIPKLADNLKLFRPKKLLPKAFKQYWFIFKDTSIAYFKNKELEQGEPLEKLNL
RGCEVVPDVNVAGRKFGIKLLIPVADGMNEMYLRCDHENQYAQWMAACMLASKGKTMADSSYQPEVLNIL
SFLRMKNRNSASQVASSLENMDMNPECFVSPRCAKRHKSKQLAARILEAHQNVAQMPLVEAKLRFIQAWQ
SLPEFGLTYYLVRFKGSKKDDILGVSYNRLIKIDAATGIPVTTWRFTNIKQWNVNWETRQVVIEFDQNVF
TAFTCLSADCKIVHEYIGGYIFLSTRSKDQNETLDEDLFHKLTGGQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH