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Report for CCDS9065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9065.1 Public Homo sapiens 12 SLC25A3 24 110 108 CCDS HistoryNCBI Gene:5250Re-query CCDS DB by CCDS ID:9065.1Re-query CCDS DB by GeneID:5250See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9065.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000188376.9 ENSP00000188376.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000188376.9Link to Ensembl Protein Viewer:ENSP00000188376.5Re-query CCDS DB by Nucleotide ID:ENST00000188376Re-query CCDS DB by Protein ID:ENSP00000188376
Original member Current member EBI ENST00000401722.7 ENSP00000383898.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401722.7Link to Ensembl Protein Viewer:ENSP00000383898.3Re-query CCDS DB by Nucleotide ID:ENST00000401722Re-query CCDS DB by Protein ID:ENSP00000383898
Original member Current member EBI ENST00000549338.5 ENSP00000447740.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000549338.5Link to Ensembl Protein Viewer:ENSP00000447740.1Re-query CCDS DB by Nucleotide ID:ENST00000549338Re-query CCDS DB by Protein ID:ENSP00000447740
Original member Current member EBI ENST00000552981.6 ENSP00000448708.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000552981.6Link to Ensembl Protein Viewer:ENSP00000448708.2Re-query CCDS DB by Nucleotide ID:ENST00000552981Re-query CCDS DB by Protein ID:ENSP00000448708
Original member Current member NCBI NM_002635.4 NP_002626.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002635.4Link to Protein Sequence:NP_002626.1Re-query CCDS DB by Nucleotide ID:NM_002635Re-query CCDS DB by Protein ID:NP_002626Link to BLAST:NP_002626.1
Original member Current member NCBI NM_213611.3 NP_998776.1 Accepted alive Link to Nucleotide Sequence:NM_213611.3Link to Protein Sequence:NP_998776.1Re-query CCDS DB by Nucleotide ID:NM_213611Re-query CCDS DB by Protein ID:NP_998776Link to BLAST:NP_998776.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002626.1 361 Q00325-2 361 100% 0 0
NP_998776.1 361 Q00325-2 361 100% 0 0

Chromosomal Locations for CCDS 9065.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98593979 98594135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98595727 98595848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98597856 98598035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98598522 98598703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98599955 98600127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98601171 98601281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98601368 98601528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGTTCTCGTCCGTGGCGCACCTGGCGCGGGCGAACCCCTTCAACACGCCACATCTGCAGCTGGTGCACG
ATGGTCTCGGGGACCTCCGCAGCAGCTCCCCAGGGCCCACGGGCCAGCCCCGCCGCCCTCGCAACCTGGC
AGCCGCCGCCGTGGAAGAGTACAGTTGTGAATTTGGCTCCGCGAAGTATTATGCACTGTGTGGCTTTGGT
GGGGTCTTAAGTTGTGGTCTGACACACACTGCTGTGGTTCCCCTGGATTTAGTGAAATGCCGTATGCAGG
TGGACCCCCAAAAGTACAAGGGCATATTTAACGGATTCTCAGTTACACTTAAAGAGGATGGTGTTCGTGG
TTTGGCTAAAGGATGGGCTCCGACTTTCCTTGGCTACTCCATGCAGGGACTCTGCAAGTTTGGCTTTTAT
GAAGTCTTTAAAGTCTTGTATAGCAATATGCTTGGAGAGGAGAATACTTATCTCTGGCGCACATCACTAT
ATTTGGCTGCCTCTGCCAGTGCTGAATTCTTTGCTGACATTGCCCTGGCTCCTATGGAAGCTGCTAAGGT
TCGAATTCAAACCCAGCCAGGTTATGCCAACACTTTGAGGGATGCAGCTCCCAAAATGTATAAGGAAGAA
GGCCTAAAAGCATTCTACAAGGGGGTTGCTCCTCTCTGGATGAGACAGATACCATACACCATGATGAAGT
TCGCCTGCTTTGAACGTACTGTTGAAGCACTGTACAAGTTTGTGGTTCCTAAGCCCCGCAGTGAATGTTC
AAAGCCAGAGCAGCTGGTTGTAACATTTGTAGCAGGTTACATAGCTGGAGTCTTTTGTGCAATTGTTTCT
CACCCTGCTGATTCTGTGGTATCTGTGTTGAATAAAGAAAAAGGTAGCAGTGCTTCTCTGGTCCTCAAGA
GACTTGGATTTAAAGGTGTATGGAAGGGACTGTTTGCCCGTATCATCATGATTGGTACCCTGACTGCACT
ACAGTGGTTTATCTATGACTCCGTGAAGGTCTACTTCAGACTTCCTCGCCCTCCTCCACCCGAGATGCCA
GAGTCTCTGAAGAAGAAGCTTGGGTTAACTCAGTAG

Translation (361 aa):
MFSSVAHLARANPFNTPHLQLVHDGLGDLRSSSPGPTGQPRRPRNLAAAAVEEYSCEFGSAKYYALCGFG
GVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLCKFGFY
EVFKVLYSNMLGEENTYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYKEE
GLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVS
HPADSVVSVLNKEKGSSASLVLKRLGFKGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMP
ESLKKKLGLTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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