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Report for CCDS12249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12249.1 Public Homo sapiens 19 TMED1 24 110 108 CCDS HistoryNCBI Gene:11018Re-query CCDS DB by CCDS ID:12249.1Re-query CCDS DB by GeneID:11018See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12249.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000214869.7 ENSP00000214869.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000214869.7Link to Ensembl Protein Viewer:ENSP00000214869.1Re-query CCDS DB by Nucleotide ID:ENST00000214869Re-query CCDS DB by Protein ID:ENSP00000214869
Original member Current member NCBI NM_006858.4 NP_006849.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006858.4Link to Protein Sequence:NP_006849.1Re-query CCDS DB by Nucleotide ID:NM_006858Re-query CCDS DB by Protein ID:NP_006849Link to BLAST:NP_006849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006849.1 227 Q13445 227 100% 0 0

Chromosomal Locations for CCDS 12249.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10832995 10833213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10834934 10835117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10835256 10835353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10836009 10836191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGATGGCGGCCGGCGCGGCCCTAGCCCTGGCCTTGTGGCTACTAATGCCACCAGTGGAGGTGGGAGGGG
CG
GGGCCCCCGCCAATCCAGGACGGTGAGTTCACGTTCCTGTTGCCGGCGGGGAGGAAGCAGTGTTTCTA
C
CAGTCCGCGCCGGCCAACGCAAGCCTCGAGACCGAATACCAGGTGATCGGAGGTGCTGGACTGGACGTG
GAC
TTCACGCTGGAGAGCCCTCAGGGCGTGCTGTTGGTCAGCGAGTCCCGCAAGGCTGATGGGGTACACA
C
G
GTGGAGCCAACGGAGGCCGGGGACTACAAGCTGTGCTTTGACAACTCCTTCAGCACCATCTCCGAGAA
G
CTGGTGTTCTTTGAACTGATCTTTGACAGCCTCCAGGATGACGAGGAGGTCGAAGGATGGGCAGAGGCT
GTG
GAGCCCGAGGAGATGCTGGATGTTAAAATGGAGGACATCAAGGAGTCCATTGAGACCATGCGGACCC
GG
CTGGAGCGCAGCATCCAGATGCTCACGCTACTGCGGGCCTTCGAGGCACGTGACCGCAACCTGCAAGA
G
GGCAACTTGGAGCGGGTCAACTTCTGGTCAGCTGTCAACGTGGCGGTGCTGCTGCTGGTGGCTGTGCTG
CAG
GTCTGCACGCTCAAGCGCTTCTTCCAGGACAAGCGCCCGGTGCCCACGTAG


Translation (227 aa):
MMAAGAALALALWLLMPPVEVGGAGPPPIQDGEFTFLLPAGRKQCFYQSAPANASLETEYQVIGGAGLDV
D
FTLESPQGVLLVSESRKADGVH
TVEPTEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEA
V
EPEEMLDVKMEDIK
ESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVL
Q
VCTLKRFFQDKRPVPT




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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