NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8558.1 Public Homo sapiens 12 COPS7A 24 110 108 CCDS HistoryNCBI Gene:50813Re-query CCDS DB by CCDS ID:8558.1Re-query CCDS DB by GeneID:50813See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000229251.7 ENSP00000229251.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000229251.7Link to Ensembl Protein Viewer:ENSP00000229251.3Re-query CCDS DB by Nucleotide ID:ENST00000229251Re-query CCDS DB by Protein ID:ENSP00000229251
Original member Current member EBI ENST00000543155.6 ENSP00000438115.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000543155.6Link to Ensembl Protein Viewer:ENSP00000438115.1Re-query CCDS DB by Nucleotide ID:ENST00000543155Re-query CCDS DB by Protein ID:ENSP00000438115
Original member Current member EBI ENST00000534877.5 ENSP00000438363.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534877.5Link to Ensembl Protein Viewer:ENSP00000438363.1Re-query CCDS DB by Nucleotide ID:ENST00000534877Re-query CCDS DB by Protein ID:ENSP00000438363
Original member Current member EBI ENST00000539735.5 ENSP00000441852.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539735.5Link to Ensembl Protein Viewer:ENSP00000441852.1Re-query CCDS DB by Nucleotide ID:ENST00000539735Re-query CCDS DB by Protein ID:ENSP00000441852
Original member Current member EBI ENST00000534947.5 ENSP00000446039.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534947.5Link to Ensembl Protein Viewer:ENSP00000446039.1Re-query CCDS DB by Nucleotide ID:ENST00000534947Re-query CCDS DB by Protein ID:ENSP00000446039
Original member Current member NCBI NM_001164093.2 NP_001157565.1 Accepted alive Link to Nucleotide Sequence:NM_001164093.2Link to Protein Sequence:NP_001157565.1Re-query CCDS DB by Nucleotide ID:NM_001164093Re-query CCDS DB by Protein ID:NP_001157565Link to BLAST:NP_001157565.1
Original member Current member NCBI NM_001164094.2 NP_001157566.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001164094.2Link to Protein Sequence:NP_001157566.1Re-query CCDS DB by Nucleotide ID:NM_001164094Re-query CCDS DB by Protein ID:NP_001157566Link to BLAST:NP_001157566.1
Original member Current member NCBI NM_001164095.3 NP_001157567.1 Accepted alive Link to Nucleotide Sequence:NM_001164095.3Link to Protein Sequence:NP_001157567.1Re-query CCDS DB by Nucleotide ID:NM_001164095Re-query CCDS DB by Protein ID:NP_001157567Link to BLAST:NP_001157567.1
Original member Current member NCBI NM_016319.4 NP_057403.1 Accepted alive Link to Nucleotide Sequence:NM_016319.4Link to Protein Sequence:NP_057403.1Re-query CCDS DB by Nucleotide ID:NM_016319Re-query CCDS DB by Protein ID:NP_057403Link to BLAST:NP_057403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157565.1 275 Q9UBW8 275 100% 0 0
NP_001157566.1 275 Q9UBW8 275 100% 0 0
NP_001157567.1 275 Q9UBW8 275 100% 0 0
NP_057403.1 275 Q9UBW8 275 100% 0 0

Chromosomal Locations for CCDS 8558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6724657 6724818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6727926 6728001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6728223 6728311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6729247 6729449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6730402 6730507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6730669 6730820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6731000 6731039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGAGTGCGGAAGTGAAGGTGACAGGGCAGAACCAGGAGCAATTTCTGCTCCTAGCCAAGTCGGCCAAGG
GGGCAGCGCTGGCCACACTCATCCATCAGGTGCTGGAGGCCCCTGGTGTCTACGTGTTTGGAGAACTGCT
GGACATGCCCAATGTTAGAGAGCTGGCTGAGAGTGACTTTGCCTCTACCTTCCGGCTGCTCACAGTGTTT
GCTTATGGGACATACGCTGACTACTTAGCTGAAGCCCGGAATCTTCCTCCACTAACAGAGGCTCAGAAGA
ATAAGCTTCGACACCTCTCAGTTGTCACCCTGGCTGCTAAAGTAAAGTGTATCCCATATGCAGTGTTGCT
GGAGGCTCTTGCCCTGCGTAATGTGCGGCAGCTGGAAGACCTTGTGATTGAGGCTGTGTATGCTGACGTG
CTTCGTGGCTCCCTGGACCAGCGCAACCAGCGGCTCGAGGTTGACTACAGCATCGGGCGGGACATCCAGC
GCCAGGACCTCAGTGCCATTGCCCGAACCCTGCAGGAATGGTGTGTGGGCTGTGAGGTCGTGCTGTCAGG
CATTGAGGAGCAGGTGAGCCGTGCCAACCAACACAAGGAGCAGCAGCTGGGCCTGAAGCAGCAGATTGAG
AGTGAGGTTGCCAACCTTAAAAAAACCATTAAAGTTACGACGGCAGCAGCAGCCGCAGCCACATCTCAGG
ACCCTGAGCAACACCTGACTGAGCTGAGGGAACCAGCTCCTGGCACCAACCAGCGCCAGCCCAGCAAGAA
AGCCTCAAAGGGCAAGGGGCTCCGAGGGAGCGCCAAGATTTGGTCCAAGTCGAATTGA

Translation (275 aa):
MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFASTFRLLTVF
AYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADV
LRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIE
SEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH