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Report for CCDS8533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8533.1 Public Homo sapiens 12 GALNT8 24 110 108 CCDS HistoryNCBI Gene:26290Re-query CCDS DB by CCDS ID:8533.1Re-query CCDS DB by GeneID:26290See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8533.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252318.7 ENSP00000252318.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252318.7Link to Ensembl Protein Viewer:ENSP00000252318.2Re-query CCDS DB by Nucleotide ID:ENST00000252318Re-query CCDS DB by Protein ID:ENSP00000252318
Original member Current member NCBI NM_017417.2 NP_059113.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017417.2Link to Protein Sequence:NP_059113.1Re-query CCDS DB by Nucleotide ID:NM_017417Re-query CCDS DB by Protein ID:NP_059113Link to BLAST:NP_059113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059113.1 637 Q9NY28 637 100% 0 0

Chromosomal Locations for CCDS 8533.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 4720678 4720888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4726532 4726829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4739163 4739329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4744517 4744700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4745429 4745626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4746144 4746258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4760958 4761143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4763253 4763390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4763952 4764047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4765379 4765546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 4772445 4772597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGATGTTTTGGAGGAAACTCCCCAAAGCCCTCTTCATTGGGCTGACTCTGGCCATTGCTGTCAATCTCC
TTCTGGTATTTTCTAGCAAGGGGACTTTACAAAACCTGTTTACGGGTGGTCTCCACAGGGAGCTTCCTTT
ACATCTGAATAAACGCTACGGGGCAGTGATAAAGAGACTCTCCCACTTGGAGGTGGAATTGCAGGATCTG
AAAGAAAGTATGAAATTAGCTCTGAGGCAACAAGAAAATGTGAACAGCACACTGAAGAGGGCGAAAGATG
AAGTACGCCCTCTTCTAAAGGCAATGGAAACCAAGGTGAATGAGACAAAGAAGCACAAAACCCAAATGAA
ACTCTTCCCACACTCACAGCTTTTCAGGCAATGGGGCGAGGATCTTTCTGAGGCCCAGCAGAAGGCGGCC
CAGGACCTCTTCCGGAAGTTTGGTTACAACGCGTACCTCAGCAACCAGCTGCCTCTCAATCGCACCATCC
CCGACACGCGAGACTACAGATGTCTTCGGAAGACATATCCTTCCCAACTCCCATCCCTCAGTGTCATTCT
CATATTCGTGAATGAAGCTCTGTCCATTATACAACGGGCCATCACCAGTATCATCAACCGGACGCCCTCT
CGATTGTTGAAGGAAATCATCTTGGTGGATGATTTCAGCTCAAATGGAGAACTAAAGGTACACTTGGATG
AGAAGATTAAGCTTTACAACCAGAAGTATCCAGGACTACTGAAAATAATACGGCATCCTGAAAGGAAAGG
TCTTGCTCAAGCCCGCAACACTGGCTGGGAAGCTGCCACAGCAGACGTGGTCGCCATCTTGGATGCTCAC
ATTGAAGTCAATGTTGGGTGGGCAGAGCCAATCTTGGCTCGGATTCAGGAGGACCGCACTGTGATTGTGT
CTCCTGTGTTTGACAACATTCGTTTTGACACCTTCAAACTGGATAAGTATGAACTGGCAGTTGATGGGTT
TAACTGGGAACTCTGGTGCCGCTACGATGCACTGCCACAAGCCTGGATTGATCTGCATGATGTCACTGCC
CCAGTGAAGAGTCCTTCAATCATGGGCATCCTGGCTGCTAACAGGCACTTCCTGGGAGAGATCGGGTCTC
TGGATGGTGGAATGCTCATCTATGGAGGAGAGAACGTGGAGCTTAGCCTGAGGGTGTGGCAGTGTGGAGG
GAAGGTCGAGATTTTGCCCTGTTCCCGGATTGCCCACCTAGAGAGACACCACAAGCCCTACGCCTTGGAT
CTCACCGCTGCCTTGAAGCGCAATGCTCTGCGAGTGGCCGAAATCTGGATGGATGAGCACAAACACATGG
TCTACTTGGCCTGGAACATACCTCTCCAGAACTCTGGAATAGATTTTGGAGACGTTTCTTCCAGAATGGC
ACTCCGGGAAAAACTGAAATGTAAAACTTTTGACTGGTACCTGAAAAATGTTTATCCACTCTTGAAGCCA
CTCCACACCATCGTGGGCTATGGAAGAATGAAAAACCTATTGGATGAAAATGTCTGCTTGGATCAGGGAC
CCGTTCCAGGCAACACCCCCATCATGTATTACTGCCATGAATTCAGCTCACAGAATGTCTACTATCACCT
AACTGGGGAGCTCTATGTGGGACAACTGATTGCAGAGGCCAGTGCTAGTGATCGCTGCCTGACAGACCCT
GGCAAGGCGGAGAAGCCCACCTTAGAACCATGCTCCAAGGCAGCTAAGAATAGACTGCATATATATTGGG
ATTTTAAACCGGGAGGAGCTGTCATAAACAGAGATACCAAGCGGTGTCTGGAGATGAAGAAGGATCTTTT
GGGTAGCCACGTGCTTGTGCTCCAGACCTGTAGCACGCAAGTGTGGGAAATCCAGCACACTGTCAGAGAC
TGGGGTCAGACCAACAGCCAGTGA

Translation (637 aa):
MMFWRKLPKALFIGLTLAIAVNLLLVFSSKGTLQNLFTGGLHRELPLHLNKRYGAVIKRLSHLEVELQDL
KESMKLALRQQENVNSTLKRAKDEVRPLLKAMETKVNETKKHKTQMKLFPHSQLFRQWGEDLSEAQQKAA
QDLFRKFGYNAYLSNQLPLNRTIPDTRDYRCLRKTYPSQLPSLSVILIFVNEALSIIQRAITSIINRTPS
RLLKEIILVDDFSSNGELKVHLDEKIKLYNQKYPGLLKIIRHPERKGLAQARNTGWEAATADVVAILDAH
IEVNVGWAEPILARIQEDRTVIVSPVFDNIRFDTFKLDKYELAVDGFNWELWCRYDALPQAWIDLHDVTA
PVKSPSIMGILAANRHFLGEIGSLDGGMLIYGGENVELSLRVWQCGGKVEILPCSRIAHLERHHKPYALD
LTAALKRNALRVAEIWMDEHKHMVYLAWNIPLQNSGIDFGDVSSRMALREKLKCKTFDWYLKNVYPLLKP
LHTIVGYGRMKNLLDENVCLDQGPVPGNTPIMYYCHEFSSQNVYYHLTGELYVGQLIAEASASDRCLTDP
GKAEKPTLEPCSKAAKNRLHIYWDFKPGGAVINRDTKRCLEMKKDLLGSHVLVLQTCSTQVWEIQHTVRD
WGQTNSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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