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Report for CCDS6276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6276.1 Public Homo sapiens 8 RIDA 24 110 108 CCDS HistoryNCBI Gene:10247Re-query CCDS DB by CCDS ID:6276.1Re-query CCDS DB by GeneID:10247See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6276.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254878.8 ENSP00000254878.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254878.8Link to Ensembl Protein Viewer:ENSP00000254878.3Re-query CCDS DB by Nucleotide ID:ENST00000254878Re-query CCDS DB by Protein ID:ENSP00000254878
Original member Current member NCBI NM_005836.3 NP_005827.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005836.3Link to Protein Sequence:NP_005827.1Re-query CCDS DB by Nucleotide ID:NM_005836Re-query CCDS DB by Protein ID:NP_005827Link to BLAST:NP_005827.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005827.1 137 P52758 137 100% 0 0

Chromosomal Locations for CCDS 6276.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 98102842 98102904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98104489 98104544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98105938 98106006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98106272 98106326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98108646 98108751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 98117032 98117096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGTCGTCCTTGATCAGAAGGGTGATCAGCACCGCGAAAGCCCCAGGGGCCATTGGACCCTACAGTCAAG
CTGTATTAGTCGACAGGACCATTTACATTTCAGGACAGATAGGCATGGACCCTTCAAGTGGACAGCTTGT
GTCAGGAGGGGTAGCAGAAGAAGCTAAACAAGCTCTTAAAAACATGGGTGAAATTCTGAAAGCTGCAGGC
TGTGACTTCACTAACGTGGTGAAAACAACTGTTCTTCTGGCTGACATAAATGACTTCAATACTGTCAATG
AAATCTACAAACAGTATTTCAAGAGTAATTTTCCTGCTAGAGCTGCTTACCAAGTTGCTGCTTTACCCAA
AGGCAGCCGAATTGAAATTGAAGCAGTAGCTATCCAAGGACCACTGACAACGGCATCACTATAA

Translation (137 aa):
MSSLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAG
CDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVAIQGPLTTASL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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