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Report for CCDS378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
378.1 Public Homo sapiens 1 PHC2 24 110 108 CCDS HistoryNCBI Gene:1912Re-query CCDS DB by CCDS ID:378.1Re-query CCDS DB by GeneID:1912See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 378.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257118.5 ENSP00000257118.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000257118.5Link to Ensembl Protein Viewer:ENSP00000257118.5Re-query CCDS DB by Nucleotide ID:ENST00000257118Re-query CCDS DB by Protein ID:ENSP00000257118
Original member Current member NCBI NM_198040.3 NP_932157.1 Accepted alive Link to Nucleotide Sequence:NM_198040.3Link to Protein Sequence:NP_932157.1Re-query CCDS DB by Nucleotide ID:NM_198040Re-query CCDS DB by Protein ID:NP_932157Link to BLAST:NP_932157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932157.1 858 Q8IXK0-1 858 100% 0 0

Chromosomal Locations for CCDS 378.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 33324865 33325019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33328870 33329146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33330071 33330212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33331348 33331462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33332275 33332404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33334090 33334292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33354401 33354566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33354841 33355253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33367116 33367428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33368536 33368622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33370421 33370585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33371017 33371094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33372289 33372447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33375366 33375539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2577 nt):
ATGGAGAATGAGCTGCCAGTCCCACATACATCTAGCAGTGCCTGTGCCACCAGCAGTACCAGCGGGGCCA
GTAGCAGCAGTGGCTGCAACAACAGCAGCAGTGGTGGAAGTGGCCGCCCCACCGGGCCCCAGATTTCTGT
GTACAGTGGTATTCCAGACCGGCAGACCGTGCAGGTGATCCAGCAGGCCCTGCACAGACAGCCCAGCACG
GCCGCTCAGTACCTGCAGCAGATGTACGCCGCCCAGCAGCAGCACCTCATGCTGCAGACCGCGGCGCTCC
AGCAGCAGCACCTCAGCAGCGCCCAGCTCCAGAGCCTGGCAGCCGTACAGCAGGCAAGCCTGGTATCCAA
TAGACAAGGAAGCACTTCAGGCAGCAATGTGTCTGCGCAGGCCCCGGCCCAGTCATCTTCGATCAACCTG
GCAGCCTCCCCAGCAGCAGCCCAGCTCCTCAACCGGGCCCAGAGTGTGAACTCTGCAGCAGCCTCAGGCA
TCGCTCAGCAGGCTGTGCTCTTGGGCAACACGTCTTCCCCAGCCCTGACTGCAAGCCAAGCACAGATGTA
TCTGAGGGCACAGATGCTCATCTTCACGCCCACGGCCACCGTCGCTACTGTGCAGCCTGAGCTCGGCACT
GGCTCCCCCGCCCGGCCCCCCACCCCCGCCCAGGTACAGAACTTGACCCTCCGAACACAGCAGACACCAG
CGGCAGCAGCCTCGGGCCCCACCCCCACTCAGCCTGTCCTGCCCAGCTTGGCCCTGAAACCCACGCCGGG
CGGTAGCCAGCCTCTGCCTACCCCAGCACAGAGCAGAAATACTGCTCAGGCTTCCCCTGCAGGTGCCAAG
CCTGGCATAGCTGACAGTGTGATGGAGCCACACAAGAAAGGAGATGGCAACAGCAGTGTGCCAGGGAGCA
TGGAAGGCCGGGCTGGGCTCAGCCGGACGGTTCCTGCTGTGGCTGCCCACCCCCTCATTGCACCAGCCTA
TGCTCAGCTGCAGCCACACCAGCTCCTCCCACAGCCATCCTCAAAGCACCTGCAGCCCCAATTTGTGATC
CAGCAGCAGCCACAGCCACAACAGCAGCAGCCGCCGCCCCAGCAGTCACGGCCTGTGCTCCAAGCTGAGC
CCCACCCCCAGCTCGCCTCAGTCTCTCCAAGCGTGGCCCTCCAGCCCAGCTCAGAGGCCCATGCCATGCC
ACTAGGCCCGGTTACACCCGCCCTGCCACTCCAGTGTCCCACTGCCAACCTGCACAAGCCTGGCGGCAGT
CAGCAGTGTCACCCTCCCACACCTGATACTGGGCCTCAGAATGGACATCCCGAGGGCGTGCCCCACACCC
CTCAACGCAGGTTCCAGCACACTTCAGCTGTCATCTTACAACTGCAGCCTGCTTCACCACCCCAGCAGTG
TGTCCCTGATGACTGGAAAGAAGTGGCACCAGGGGAGAAAAGTGTGCCTGAGACGCGGTCTGGCCCATCA
CCACATCAGCAGGCTATTGTCACTGCCATGCCTGGTGGCCTGCCTGTACCCACGAGCCCTAACATCCAGC
CGTCCCCAGCTCACGAGACAGGGCAGGGCATTGTTCATGCACTGACCGACCTCAGCAGCCCCGGCATGAC
CTCAGGGAACGGAAACTCTGCCTCCAGCATCGCCGGCACTGCCCCCCAGAATGGTGAGAATAAACCACCA
CAGGCCATTGTGAAACCCCAAATCCTGACGCATGTTATCGAAGGGTTTGTGATCCAGGAGGGGGCGGAGC
CTTTCCCGGTGGGACGCTCGTCCCTGCTGGTGGGGAATCTCAAGAAGAAGTATGCACAGGGGTTCCTGCC
TGAGAAACTTCCACAGCAGGATCACACCACCACCACTGACTCGGAGATGGAGGAGCCCTATCTGCAAGAA
TCCAAAGAGGAGGGTGCTCCCCTCAAACTCAAGTGTGAGCTCTGTGGCCGGGTGGACTTTGCCTATAAGT
TCAAGCGTTCCAAGCGCTTCTGTTCCATGGCTTGTGCAAAGAGGTACAACGTGGGATGCACCAAACGGGT
GGGACTTTTCCACTCAGACCGGAGCAAGCTGCAGAAGGCAGGAGCTGCGACCCACAACCGCCGTCGGGCC
AGCAAAGCCAGTCTGCCACCACTTACCAAGGATACCAAGAAGCAGCCAACAGGCACTGTGCCCCTTTCGG
TTACTGCTGCTTTGCAGCTAACACACAGCCAGGAAGACTCCAGCCGTTGCTCAGATAACTCAAGCTATGA
GGAACCCTTGTCACCCATCTCAGCCAGCTCATCTACTTCCCGCCGGCGACAAGGCCAGCGGGACCTGGAG
CTCCCCGACATGCATATGCGGGACCTGGTGGGCATGGGACACCACTTCCTGCCAAGTGAGCCCACCAAGT
GGAATGTAGAAGACGTCTACGAATTCATCCGCTCTCTGCCAGGCTGCCAGGAGATAGCAGAGGAATTCCG
TGCCCAGGAAATCGACGGGCAAGCCCTGCTGCTGCTCAAGGAGGACCACCTGATGAGCGCCATGAACATC
AAGCTGGGGCCCGCCCTGAAGATCTACGCCCGCATCAGCATGCTCAAGGACTCCTAG

Translation (858 aa):
MENELPVPHTSSSACATSSTSGASSSSGCNNSSSGGSGRPTGPQISVYSGIPDRQTVQVIQQALHRQPST
AAQYLQQMYAAQQQHLMLQTAALQQQHLSSAQLQSLAAVQQASLVSNRQGSTSGSNVSAQAPAQSSSINL
AASPAAAQLLNRAQSVNSAAASGIAQQAVLLGNTSSPALTASQAQMYLRAQMLIFTPTATVATVQPELGT
GSPARPPTPAQVQNLTLRTQQTPAAAASGPTPTQPVLPSLALKPTPGGSQPLPTPAQSRNTAQASPAGAK
PGIADSVMEPHKKGDGNSSVPGSMEGRAGLSRTVPAVAAHPLIAPAYAQLQPHQLLPQPSSKHLQPQFVI
QQQPQPQQQQPPPQQSRPVLQAEPHPQLASVSPSVALQPSSEAHAMPLGPVTPALPLQCPTANLHKPGGS
QQCHPPTPDTGPQNGHPEGVPHTPQRRFQHTSAVILQLQPASPPQQCVPDDWKEVAPGEKSVPETRSGPS
PHQQAIVTAMPGGLPVPTSPNIQPSPAHETGQGIVHALTDLSSPGMTSGNGNSASSIAGTAPQNGENKPP
QAIVKPQILTHVIEGFVIQEGAEPFPVGRSSLLVGNLKKKYAQGFLPEKLPQQDHTTTTDSEMEEPYLQE
SKEEGAPLKLKCELCGRVDFAYKFKRSKRFCSMACAKRYNVGCTKRVGLFHSDRSKLQKAGAATHNRRRA
SKASLPPLTKDTKKQPTGTVPLSVTAALQLTHSQEDSSRCSDNSSYEEPLSPISASSSTSRRRQGQRDLE
LPDMHMRDLVGMGHHFLPSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLLKEDHLMSAMNI
KLGPALKIYARISMLKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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