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Report for CCDS3868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3868.1 Public Homo sapiens 5 IRX2 24 110 108 CCDS HistoryNCBI Gene:153572Re-query CCDS DB by CCDS ID:3868.1Re-query CCDS DB by GeneID:153572See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3868.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302057.6 ENSP00000307006.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302057.6Link to Ensembl Protein Viewer:ENSP00000307006.5Re-query CCDS DB by Nucleotide ID:ENST00000302057Re-query CCDS DB by Protein ID:ENSP00000307006
Original member Current member EBI ENST00000382611.10 ENSP00000372056.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000382611.10Link to Ensembl Protein Viewer:ENSP00000372056.6Re-query CCDS DB by Nucleotide ID:ENST00000382611Re-query CCDS DB by Protein ID:ENSP00000372056
Original member Current member NCBI NM_001134222.2 NP_001127694.1 Accepted alive Link to Nucleotide Sequence:NM_001134222.2Link to Protein Sequence:NP_001127694.1Re-query CCDS DB by Nucleotide ID:NM_001134222Re-query CCDS DB by Protein ID:NP_001127694Link to BLAST:NP_001127694.1
Original member Current member NCBI NM_033267.5 NP_150366.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033267.5Link to Protein Sequence:NP_150366.1Re-query CCDS DB by Nucleotide ID:NM_033267Re-query CCDS DB by Protein ID:NP_150366Link to BLAST:NP_150366.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127694.1 471 Q9BZI1 471 100% 0 0
NP_150366.1 471 Q9BZI1 471 100% 0 0

Chromosomal Locations for CCDS 3868.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 2747564 2747616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 2748345 2749052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 2749382 2749787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 2751165 2751413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGTCCTACCCGCAGGGCTACCTGTACCAGGCGCCCGGCTCGCTGGCGCTCTACTCGTGCCCGGCCTACG
GCGCGTCGGCTTTGGCGGCTCCGCGCAGCGAGGAGCTGGCGCGCTCGGCGTCGGGCTCGGCGTTCAGCCC
CTACCCGGGCTCGGCGGCCTTCACGGCGCAGGCGGCCACCGGCTTCGGGAGCCCGCTGCAGTACTCGGCC
GACGCCGCCGCCGCCGCCGCCGGCTTCCCGTCCTACATGGGCGCACCCTACGACGCGCACACCACCGGCA
TGACCGGCGCCATCAGCTACCACCCGTACGGCAGCGCGGCCTACCCGTACCAGCTCAACGACCCCGCGTA
CCGCAAGAACGCCACGCGGGACGCCACGGCCACTCTCAAGGCCTGGCTCAACGAGCACCGCAAGAACCCC
TACCCCACCAAGGGCGAGAAGATCATGCTAGCCATCATCACCAAGATGACCCTCACCCAGGTCTCCACCT
GGTTCGCCAACGCGCGCCGGCGCCTCAAGAAGGAGAACAAGATGACCTGGGCCCCGAGAAACAAAAGCGA
AGATGAGGACGAGGACGAGGGCGACGCTACCAGAAGCAAGGACGAGAGTCCCGACAAGGCGCAGGAGGGC
ACGGAGACCTCGGCAGAGGACGAAGGGATCAGCCTGCACGTGGACTCGCTCACGGATCACTCGTGCTCGG
CCGAGTCGGACGGGGAGAAGCTTCCGTGCCGCGCCGGGGACCCCCTGTGCGAATCGGGCTCGGAGTGCAA
GGACAAGTATGACGACCTGGAGGACGACGAGGACGACGACGAGGAGGGCGAGCGGGGCCTGGCGCCGCCC
AAGCCCGTGACCTCGTCGCCGCTTACCGGCTTGGAGGCGCCGCTGCTGAGCCCCCCGCCCGAGGCCGCGC
CCCGCGGTGGCCGCAAGACGCCCCAGGGCAGCCGGACGTCTCCGGGCGCGCCGCCCCCCGCCAGCAAGCC
CAAGCTGTGGTCGCTGGCCGAGATCGCCACGTCGGACCTCAAGCAGCCGAGCCTGGGCCCGGGCTGCGGG
CCACCGGGGCTGCCCGCGGCCGCCGCGCCGGCCTCAACCGGGGCACCGCCAGGAGGCTCGCCCTACCCTG
CCTCGCCGCTGCTGGGCCGCCCCCTCTACTACACGTCGCCCTTCTACGGCAACTACACAAACTACGGGAA
CTTGAACGCGGCGCTGCAGGGCCAGGGTCTCCTGCGGTACAACTCTGCGGCCGCGGCCCCCGGCGAGGCC
CTGCACACCGCGCCAAAGGCGGCCAGCGACGCGGGCAAGGCGGGCGCGCACCCGCTCGAGTCCCACTACC
GGTCCCCGGGCGGCGGCTACGAGCCCAAGAAAGATGCCAGCGAGGGCTGCACCGTGGTTGGCGGGGGCGT
CCAGCCCTACCTATAG

Translation (471 aa):
MSYPQGYLYQAPGSLALYSCPAYGASALAAPRSEELARSASGSAFSPYPGSAAFTAQAATGFGSPLQYSA
DAAAAAAGFPSYMGAPYDAHTTGMTGAISYHPYGSAAYPYQLNDPAYRKNATRDATATLKAWLNEHRKNP
YPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWAPRNKSEDEDEDEGDATRSKDESPDKAQEG
TETSAEDEGISLHVDSLTDHSCSAESDGEKLPCRAGDPLCESGSECKDKYDDLEDDEDDDEEGERGLAPP
KPVTSSPLTGLEAPLLSPPPEAAPRGGRKTPQGSRTSPGAPPPASKPKLWSLAEIATSDLKQPSLGPGCG
PPGLPAAAAPASTGAPPGGSPYPASPLLGRPLYYTSPFYGNYTNYGNLNAALQGQGLLRYNSAAAAPGEA
LHTAPKAASDAGKAGAHPLESHYRSPGGGYEPKKDASEGCTVVGGGVQPYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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