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Report for CCDS43304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43304.1 Public Homo sapiens 5 RETREG1 24 110 108 CCDS HistoryNCBI Gene:54463Re-query CCDS DB by CCDS ID:43304.1Re-query CCDS DB by GeneID:54463See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43304.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306320.10 ENSP00000304642.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306320.10Link to Ensembl Protein Viewer:ENSP00000304642.9Re-query CCDS DB by Nucleotide ID:ENST00000306320Re-query CCDS DB by Protein ID:ENSP00000304642
Original member Current member NCBI NM_001034850.3 NP_001030022.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001034850.3Link to Protein Sequence:NP_001030022.1Re-query CCDS DB by Nucleotide ID:NM_001034850Re-query CCDS DB by Protein ID:NP_001030022Link to BLAST:NP_001030022.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030022.1 497 Q9H6L5-1 497 100% 0 0

Chromosomal Locations for CCDS 43304.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 16474741 16475234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16477662 16477788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16478034 16478098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16478850 16478987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16481009 16481093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16483346 16483472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16565763 16565793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16571996 16572102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 16616652 16616971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGGCGAGCCCGGCGCCTCCGGAGCACGCCGAGGAGGGATGCCCGGCTCCTGCCGCCGAGGAGCAGGCGC
CGCCGTCGCCGCCACCGCCCCAGGCATCCCCCGCAGAGCGGCAGCAGCAGGAGGAGGAAGCGCAGGAAGC
TGGGGCGGCGGAGGGCGCGGGGTTGCAGGTGGAGGAGGCCGCGGGCCGGGCGGCGGCCGCGGTAACCTGG
CTGCTCGGGGAGCCGGTGCTGTGGCTGGGCTGCCGCGCCGACGAGCTGCTGAGCTGGAAGAGGCCGCTGC
GGAGCCTGCTCGGCTTCGTCGCTGCCAACCTGCTGTTCTGGTTCCTTGCATTGACTCCATGGAGAGTATA
TCACCTGATTTCCGTCATGATACTTGGGCGTGTTATTATGCAAATAATAAAGGATATGGTTTTGTCTAGA
ACAAGAGGTGCACAGTTGTGGAGAAGCCTCAGTGAAAGCTGGGAAGTTATCAATTCCAAACCAGATGAAA
GACCCAGGCTCAGCCACTGTATTGCAGAATCATGGATGAATTTCAGCATATTTCTTCAAGAAATGTCTCT
TTTTAAACAGCAGAGCCCTGGCAAGTTTTGTCTCCTGGTCTGTAGTGTGTGCACATTTTTTACGATCTTG
GGAAGTTACATTCCTGGGGTTATACTCAGCTATCTACTGTTACTGTGTGCATTTTTGTGTCCATTGTTTA
AATGTAATGATATTGGACAAAAAATTTACAGCAAAATTAAGTCAGTTCTGCTGAAACTGGATTTTGGAAT
TGGAGAATATATTAATCAGAAGAAACGTGAGAGATCTGAAGCAGACAAAGAAAAAAGTCACAAAGATGAC
AGTGAATTAGACTTTTCAGCTCTTTGTCCTAAGATTAGCCTCACGGTTGCTGCCAAAGAGTTATCTGTGT
CTGACACAGACGTCTCAGAGGTATCCTGGACTGATAATGGGACCTTCAACCTTTCAGAAGGATACACTCC
ACAGACAGACACTTCTGATGATCTTGACCGACCCAGTGAGGAAGTTTTCTCTAGAGATCTTTCAGATTTT
CCATCTCTAGAAAATGGCATGGGAACAAATGATGAAGATGAATTAAGCCTTGGTTTGCCCACTGAGCTCA
AGAGAAAGAAGGAACAGTTGGACAGTGGTCACAGACCAAGCAAAGAGACGCAATCAGCAGCTGGTCTCAC
CCTTCCTCTGAACAGTGACCAAACCTTTCACCTGATGAGCAACCTGGCTGGGGATGTTATCACAGCTGCA
GTGACTGCAGCTATCAAAGACCAGTTAGAGGGTGTGCAGCAAGCACTTTCTCAGGCTGCCCCCATCCCAG
AAGAGGACACAGACACTGAAGAAGGTGATGACTTTGAACTACTTGACCAGTCAGAGCTGGATCAAATTGA
GAGTGAATTGGGACTTACACAAGACCAGGAAGCAGAAGCACAGCAAAATAAGAAGTCTTCAGGTTTCCTT
TCAAATCTGCTGGGAGGCCATTAA

Translation (497 aa):
MASPAPPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAAAAVTW
LLGEPVLWLGCRADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLISVMILGRVIMQIIKDMVLSR
TRGAQLWRSLSESWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKFCLLVCSVCTFFTIL
GSYIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSVLLKLDFGIGEYINQKKRERSEADKEKSHKDD
SELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDF
PSLENGMGTNDEDELSLGLPTELKRKKEQLDSGHRPSKETQSAAGLTLPLNSDQTFHLMSNLAGDVITAA
VTAAIKDQLEGVQQALSQAAPIPEEDTDTEEGDDFELLDQSELDQIESELGLTQDQEAEAQQNKKSSGFL
SNLLGGH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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