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Report for CCDS4406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4406.1 Public Homo sapiens 5 SNCB 24 110 108 CCDS HistoryNCBI Gene:6620Re-query CCDS DB by CCDS ID:4406.1Re-query CCDS DB by GeneID:6620See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4406.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310112.7 ENSP00000308057.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310112.7Link to Ensembl Protein Viewer:ENSP00000308057.3Re-query CCDS DB by Nucleotide ID:ENST00000310112Re-query CCDS DB by Protein ID:ENSP00000308057
Original member Current member EBI ENST00000393693.7 ENSP00000377296.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393693.7Link to Ensembl Protein Viewer:ENSP00000377296.2Re-query CCDS DB by Nucleotide ID:ENST00000393693Re-query CCDS DB by Protein ID:ENSP00000377296
Original member Current member EBI ENST00000506696.1 ENSP00000422223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506696.1Link to Ensembl Protein Viewer:ENSP00000422223.1Re-query CCDS DB by Nucleotide ID:ENST00000506696Re-query CCDS DB by Protein ID:ENSP00000422223
Original member Current member EBI ENST00000510387.5 ENSP00000424073.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510387.5Link to Ensembl Protein Viewer:ENSP00000424073.1Re-query CCDS DB by Nucleotide ID:ENST00000510387Re-query CCDS DB by Protein ID:ENSP00000424073
Original member Current member NCBI NM_001001502.3 NP_001001502.1 Accepted alive Link to Nucleotide Sequence:NM_001001502.3Link to Protein Sequence:NP_001001502.1Re-query CCDS DB by Nucleotide ID:NM_001001502Re-query CCDS DB by Protein ID:NP_001001502Link to BLAST:NP_001001502.1
Original member Current member NCBI NM_001363140.2 NP_001350069.1 Accepted alive Link to Nucleotide Sequence:NM_001363140.2Link to Protein Sequence:NP_001350069.1Re-query CCDS DB by Nucleotide ID:NM_001363140Re-query CCDS DB by Protein ID:NP_001350069Link to BLAST:NP_001350069.1
Original member Current member NCBI NM_003085.5 NP_003076.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003085.5Link to Protein Sequence:NP_003076.1Re-query CCDS DB by Nucleotide ID:NM_003085Re-query CCDS DB by Protein ID:NP_003076Link to BLAST:NP_003076.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001502.1 134 Q16143 134 100% 0 0
NP_001350069.1 134 Q16143 134 100% 0 0
NP_003076.1 134 Q16143 134 100% 0 0

Chromosomal Locations for CCDS 4406.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176620811 176620843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176621214 176621303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176626398 176626516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176626720 176626761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176629534 176629654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGGACGTGTTCATGAAGGGCCTGTCCATGGCCAAGGAGGGCGTTGTGGCAGCCGCGGAGAAAACCAAGC
AGGGGGTCACCGAGGCGGCGGAGAAGACCAAGGAGGGCGTCCTCTACGTCGGAAGCAAGACCCGAGAAGG
TGTGGTACAAGGTGTGGCTTCAGTGGCTGAAAAAACCAAGGAACAGGCCTCACATCTGGGAGGAGCTGTG
TTCTCTGGGGCAGGGAACATCGCAGCAGCCACAGGACTGGTGAAGAGGGAGGAATTCCCTACTGATCTGA
AGCCAGAGGAAGTGGCCCAGGAAGCTGCTGAAGAACCACTGATTGAGCCCCTGATGGAGCCAGAAGGGGA
GAGTTATGAGGACCCACCCCAGGAGGAATATCAGGAGTATGAGCCAGAGGCGTAG

Translation (134 aa):
MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTKEQASHLGGAV
FSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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