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Report for CCDS33740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33740.1 Public Homo sapiens 3 ZNF620 24 110 108 CCDS HistoryNCBI Gene:253639Re-query CCDS DB by CCDS ID:33740.1Re-query CCDS DB by GeneID:253639See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33740.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314529.10 ENSP00000322265.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314529.10Link to Ensembl Protein Viewer:ENSP00000322265.6Re-query CCDS DB by Nucleotide ID:ENST00000314529Re-query CCDS DB by Protein ID:ENSP00000322265
Original member Current member NCBI NM_175888.4 NP_787084.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175888.4Link to Protein Sequence:NP_787084.1Re-query CCDS DB by Nucleotide ID:NM_175888Re-query CCDS DB by Protein ID:NP_787084Link to BLAST:NP_787084.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787084.1 422 Q6ZNG0-1 422 100% 0 0

Chromosomal Locations for CCDS 33740.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 40506353 40506376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40511470 40511596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40512402 40512515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 40515860 40516863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGTTCCAGACCGCTTGGCGCCAGGAACCAGTGACCTTTGAGGATGTGGCTGTGTACTTCACCCAGAATG
AATGGGCCAGCCTGGACTCTGTGCAGAGGGCCCTGTACAGGGAAGTGATGCTGGAGAATTATGCAAATGT
GGCTTCCCTGGCATTCCCATTCACCACGCCTGTTCTGGTCTCCCAGCTGGAGCAAGGGGAACTGCCATGG
GGCCTCGATCCCTGGGAACCTATGGGCAGGGAGGCTCTCAGAGGTATCTGTCCAGGGGATGAGGCCAGAA
CTGAGAAGGAAGGATTAACTCCAAAGGATCATGTGTCCAAAGAAACAGAGTCCTTCAGACTGATGGTGGG
GGGCCTGCCAGGGAATGTTTCCCAGCACCTTGACTTTGGGAGCAGCCTAGAGCAGCCACAAGGTCATTGG
ATAATTAAGACAAAGTCAAAGAGGAGACATTTCACAGATACCTCAGCCAGGCACCATGAGGCCTATGAGG
TCAAGAATGGAGAGAAGTTTGAGAAATTAGGAAAAAATATTAGCGTCAGCACACAACTCACTACAAATCA
GACAAATCCTAGTGGTCAGATATCTTATGAATGTGGACAATGTGGCAGATATTTCATTCAAATGGCAGAC
TTCCACCGACATGAGAAATGTCACACTGGTGAAAAGTCTTTTGAATGCAAAGAATGTGGAAAATACTTCA
GATATAACTCATTACTTATTCGGCATCAGATAATTCACACTGGAAAGAAACCATTTAAATGTAAAGAATG
TGGAAAAGGTTTAAGTTCAGACACAGCCTTGATTCAGCATCAGAGAATCCACACTGGAGAAAAGCCCTAT
GAATGTAAGGAGTGCGGCAAGGCCTTCAGTAGCAGCTCTGTCTTCCTCCAGCACCAGAGGTTCCACACTG
GGGAGAAGCTCTATGAATGTAACGAATGTTGGAAAACTTTCAGTTGCAGCTCAAGTTTCACTGTCCATCA
GCGAATGCACACTGGGGAGAAACCTTATGAATGTAAAGAGTGTGGAAAACGATTAAGCTCCAACACAGCC
TTGACTCAGCATCAGCGAATTCACACTGGGGAGAAGCCCTTTGAATGTAAGGAGTGTGGGAAGGCATTCA
ATCAGAAAATAACCCTGATTCAGCACCAGCGAGTTCACACTGGCGAGAAACCTTATGAGTGTAAAGTGTG
TGGTAAAACCTTCAGCTGGTGTGGAAGATTCATTCTGCATCAGAAACTACACACTCAGAAGACACCTGTC
CAAGCATAG

Translation (422 aa):
MFQTAWRQEPVTFEDVAVYFTQNEWASLDSVQRALYREVMLENYANVASLAFPFTTPVLVSQLEQGELPW
GLDPWEPMGREALRGICPGDEARTEKEGLTPKDHVSKETESFRLMVGGLPGNVSQHLDFGSSLEQPQGHW
IIKTKSKRRHFTDTSARHHEAYEVKNGEKFEKLGKNISVSTQLTTNQTNPSGQISYECGQCGRYFIQMAD
FHRHEKCHTGEKSFECKECGKYFRYNSLLIRHQIIHTGKKPFKCKECGKGLSSDTALIQHQRIHTGEKPY
ECKECGKAFSSSSVFLQHQRFHTGEKLYECNECWKTFSCSSSFTVHQRMHTGEKPYECKECGKRLSSNTA
LTQHQRIHTGEKPFECKECGKAFNQKITLIQHQRVHTGEKPYECKVCGKTFSWCGRFILHQKLHTQKTPV
QA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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