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Report for CCDS298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
298.1 Public Homo sapiens 1 SYTL1 24 110 108 CCDS HistoryNCBI Gene:84958Re-query CCDS DB by CCDS ID:298.1Re-query CCDS DB by GeneID:84958See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 298.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318074.9 ENSP00000316464.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318074.9Link to Ensembl Protein Viewer:ENSP00000316464.5Re-query CCDS DB by Nucleotide ID:ENST00000318074Re-query CCDS DB by Protein ID:ENSP00000316464
Original member Current member NCBI NM_032872.3 NP_116261.1 Accepted alive Link to Nucleotide Sequence:NM_032872.3Link to Protein Sequence:NP_116261.1Re-query CCDS DB by Nucleotide ID:NM_032872Re-query CCDS DB by Protein ID:NP_116261Link to BLAST:NP_116261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116261.1 550 Q8IYJ3-2 550 100% 0 0

Chromosomal Locations for CCDS 298.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27345335 27345525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27347421 27347569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27347808 27347880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27347967 27348012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27349116 27349152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27349398 27349498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27349652 27349765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27349972 27350132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27350389 27350485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27350794 27350952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27351258 27351336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27351456 27351555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27353283 27353488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27353713 27353852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGCCCCAGAGGGGCCACCCATCGCAAGAGGGGCTTTGGGCTCTGCCCTCCCTCCCCATGGCGCATGGGC
CAAAGCCTGAGACTGAAGGACTGTTGGACCTCAGCTTCCTGACAGAGGAGGAGCAGGAGGCCATTGCTGG
CGTCCTCCAACGAGATGCCCGCCTGCGCCAGCTGGAGGAGGGGCGGGTCAGCAAGCTCCGGGCCTCAGTG
GCAGACCCTGGGCAGCTGAAGATCCTGACAGGGGACTGGTTCCAGGAAGCACGCTCCCAGCGGCACCACA
ATGCCCACTTCGGCTCTGACCTTGTCCGAGCGTCTATGCGCAGGAAGAAGAGCACCAGGGGAGACCAGGC
TCCAGGCCACGACAGGGAGGCTGAGGCTGCTGTGAAAGAGAAGGAAGAGGGGCCAGAGCCCAGGCTCACC
ATTGATGAGGCCCCTCAGGAGAGGCTCAGGGAGACTGAGGCTTCAGATCCTGAGGAGGCGTCCCAGGCCC
AGGAAGATCCTGGCCAAGGAGACCAACAGGTCTGTGCCGAGGAGGCTGACCCGGAGCTGGAGCCCGCGTC
GGGGGGAGAGCAGGAGCCGCGGCCCCAGCAAGCCCAGACCAAGGCCGCGTCCCAGATCCTGGAGAATGGG
GAGGAGGCCCCGGGGCCCGACCCCTCTCTCGACCGCATGCTCAGCAGCAGCTCCTCGGTGTCCAGCCTTA
ACTCCTCCACGCTGAGCGGCAGCCAGATGAGCCTGTCAGGCGACGCGGAGGCGGTGCAGGTCCGCGGCTC
CGTGCACTTCGCGCTGCACTACGAGCCGGGCGCCGCCGAGCTGCGCGTGCACGTGATCCAGTGCCAGGGC
CTGGCCGCCGCCCGGCGCCGCCGCTCGGACCCCTACGTCAAAAGCTACCTCCTCCCGGATAAGCAGAGCA
AGCGCAAGACGGCGGTGAAGAAACGGAATCTGAATCCGGTTTTCAACGAGACTCTCCGGTACTCCGTCCC
GCAGGCCGAGCTTCAGGGCCGCGTGCTGAGCCTGTCTGTGTGGCACCGCGAAAGCCTGGGTCGCAACATC
TTTCTGGGCGAAGTTGAAGTGCCCCTGGACACGTGGGACTGGGGCTCTGAGCCCACCTGGCTCCCCCTGC
AGCCCCGGGTCCCACCCTCTCCCGACGACCTTCCGAGCCGCGGGTTACTCGCCCTGTCCCTCAAGTACGT
CCCCGCCGGCTCCGAGGGCGCAGGACTGCCCCCGAGCGGGGAGCTGCACTTCTGGGTGAAGGAGGCTCGG
GACCTCCTGCCGCTGCGGGCAGGATCCCTGGACACTTACGTACAATGCTTCGTGCTGCCTGATGACAGCC
AGGCCAGCCGCCAGCGTACAAGGGTTGTGCGACGCAGCCTCAGCCCTGTGTTCAATCACACCATGGTGTA
CGATGGCTTTGGGCCTGCTGACCTGCGCCAGGCTTGTGCCGAGCTCTCCCTCTGGGACCATGGGGCCCTG
GCCAACCGCCAGCTGGGGGGCACACGCCTCAGCCTGGGCACCGGCAGCAGCTATGGGCTGCAGGTGCCCT
GGATGGATTCCACACCTGAGGAGAAGCAGCTGTGGCAAGCCCTCCTGGAGCAGCCGTGCGAATGGGTGGA
TGGCCTTCTACCCCTCAGAACCAACCTGGCCCCCAGGACGTAG

Translation (550 aa):
MPQRGHPSQEGLWALPSLPMAHGPKPETEGLLDLSFLTEEEQEAIAGVLQRDARLRQLEEGRVSKLRASV
ADPGQLKILTGDWFQEARSQRHHNAHFGSDLVRASMRRKKSTRGDQAPGHDREAEAAVKEKEEGPEPRLT
IDEAPQERLRETEASDPEEASQAQEDPGQGDQQVCAEEADPELEPASGGEQEPRPQQAQTKAASQILENG
EEAPGPDPSLDRMLSSSSSVSSLNSSTLSGSQMSLSGDAEAVQVRGSVHFALHYEPGAAELRVHVIQCQG
LAAARRRRSDPYVKSYLLPDKQSKRKTAVKKRNLNPVFNETLRYSVPQAELQGRVLSLSVWHRESLGRNI
FLGEVEVPLDTWDWGSEPTWLPLQPRVPPSPDDLPSRGLLALSLKYVPAGSEGAGLPPSGELHFWVKEAR
DLLPLRAGSLDTYVQCFVLPDDSQASRQRTRVVRRSLSPVFNHTMVYDGFGPADLRQACAELSLWDHGAL
ANRQLGGTRLSLGTGSSYGLQVPWMDSTPEEKQLWQALLEQPCEWVDGLLPLRTNLAPRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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