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Report for CCDS13900.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13900.2 Public Homo sapiens 22 PRR14L 24 110 108 CCDS HistoryNCBI Gene:253143Re-query CCDS DB by CCDS ID:13900.2Re-query CCDS DB by GeneID:253143See the combined annotation on chromosome 22 in Sequence Viewer

Public Note for CCDS 13900.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available transcript and protein data. Conservation among mammals supports the exons of this splice variant and the update is also supported by the mRNA, CT841517.1, with additional 5' exons supported by overlapping human ESTs.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13900.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327423.11 ENSP00000331845.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327423.11Link to Ensembl Protein Viewer:ENSP00000331845.6Re-query CCDS DB by Nucleotide ID:ENST00000327423Re-query CCDS DB by Protein ID:ENSP00000331845
Original member Current member NCBI NM_173566.3 NP_775837.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173566.3Link to Protein Sequence:NP_775837.2Re-query CCDS DB by Nucleotide ID:NM_173566Re-query CCDS DB by Protein ID:NP_775837Link to BLAST:NP_775837.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775837.2 2151 Q5THK1-1 2151 100% 0 0

Chromosomal Locations for CCDS 13900.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31685527 31685803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31688156 31688227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31701656 31701762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31703550 31703721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31704655 31704726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31712083 31717291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31725538 31725610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31738387 31738860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6456 nt):
ATGCTGTCATCTGGAGTAGAGACTCAGCCAGTTCCACTTGATTCCTCCATGTCTGCCGTGGTACAGGAAT
TATACTCTGAACTCCCAGTAAGTGTCTCCAGAGAGCTTCATGCTGACCCTGAGCCAAGTGTGATTCCAGA
TGTAAAACCTGGAGCCTCAAGCTCTCTTTTAAGTCAGAATAGGGCATTGCCCTTGGAGCTGCAGAGGACT
CATGTGGAGAGTTGTTGTGAAGAAACCTATGAGACCTTGGATCATGGGAGTGAGCCTGGGCGATGTGGGC
TAGTGGACTCCACAGCAGGAGGTTCTGTGGCATCTGGGATCTTGGATAGGGCAAAGAGAAGCGAGAGCAT
GGAGCCAAAGGTCTTCAGAGATCCAGGGGGCCAGGCAGGAATTATAAGAGAACCCTCTGAGGGAGCAAAG
GAAGATCCACATCAACATTCCACAGCTGCTGAAGAAAAGACTAGCCCGAGTCAGGAGGATCTCCTGATGC
AGTCCAGCAAAGAACTTTCACATGTGGACCTCCCTGAAGATTTTCTAAGGAGCAAAGAAGGAAATGTACA
GATTACAGCTGAAACTCTGCTAAAATCCGCCGAAGTACAAGGTATGAAGGTCAATGGGACTAAGACGGAT
AATAATGAAGGACACAAAAATGGCAATGTGAGTAAAGATCTCTCAGCTGGATGCGGTGAATTCCAAGAAG
TAGACAAAATCATGACCAGTGATGAGGTTTCAGAAACCAGCACATTAGTTACCCCAGAACCTTTAACCTT
TGTGGACCCTGTATTAACAGAAGCAACTCCTAAAGAAAAAGAATGTGAAGAATTAAAAAGTTGTCCTTGG
TTGTCATTACCAGGAAACAGTGCCATTTCTAATGTGGACAATGGGAAGGAAGAGTTGTGTAAACCAAACC
TGGTCTGTGAAGCAGATGACAATCACCAACAGCTTCATGGCCACCATAATGAACAACCCAGTTCTACACA
TGATAGTCCCACAGCCACAAGCCCTTTGAAAGAAAATTCTGAAGTTTCATGTTTCACATCAGACTTGTCT
GGTCCAGAATCCAGAACAATATCCTTAGAAAACTGTGGTTTTGAAGGTGGTGGTTTGCTAAAGAGATCTG
CTGAAAAGACAGACAGTTCTTATTTTTATAGGGGGGATGATCAAGGGAAGAACTTGGCTTCTAGAGAAGA
AAATGAGGAACGGCTTTTGATTCCTAGGAGTGAAAGAGGTGGACCTTTTCTTTTTAATGCCAGGGAACCA
GAAAAGGAGATTAGTGGTCGTTGTTCTGGTGAAAAAGAGCCTGTTGTTTCTCCAAAGGAAAATATCCACA
ATAACTGCATTCAAGACAGTCTCCATACAGGGAACTCTAGTTCTTTAATGCCCAATTCTTTTACTGAAGC
CACAGAAGTAATGTTAAATAAAAATGATTTGAAAATTACTGTACACGTTCAAGGTAACTTGACAAACCCT
GAGGACCATAAAGAAACTTTTACTAATATGAGCCATCCTGGTGGACACTCTGAAGAAAGCAGTTTTTCCT
CCTTGATGCAGATTGAAGAGGCAGGACAGACAACCCCTGTAGAGCCCAATATATTAAGTAAATCTTTTTA
CACTAAAGACTGTAACTCCTTAGTCAGCATCCAGAGAAATCTGGAAGGCAACACCCAGTTAAATGAAGCA
TCATGTAATGATTTTCTGTTTGAAAGAAAATCCATTGTGAGTTTAATGCCAGAGGATCAAATAAGTCCTG
TAAGTGAGGTATTAAAACCCAAGCAAGGTACTGCTCTGTTGCTACCATCCCCAGAATTTGATTACAGACC
TGAGTCAGAAAAAGTTATACAGACCTCACATGATGATATTCCACTTTTAGATGAACAGAGCATAGCCTGT
GAGATGAATGAACTTTCTTGTACCAATGAACTGGTTGTAAACAAAGTAGAAAGTGAATGTGTTTTAAATC
AACAAGTGTCCCTTAATTCTCAAGAACATGCAAATTTGCCAACTGACTCTCTACTGCATTTAAACAAAGA
GATGCCTTTAGCAACAGGCAGAGATGCCCATCAGAGCCATCACCCTCCATTAGAGGGTAGAGCAGATGTC
ATTGCTGATATACAAACCATTCCCATTCAGACAAAAATAAAAGACATCTCTCCACCAGGTAACCAAACCT
GTGGTGCCTCTTCAAACTGTCCCACCTTAAACATCAAACCAGTAAGCCTAGAGAGAAAAAAGGAAATGGC
TGATTCAGGAACAAAAGCTCTACATTCCAGGCTGCGCTCAAATAAGAGAGAAGCAGCTGGCTTTCCTCAA
GTGGTCTCTGTCATAGAATGTCACAGCGTTCAATCTCAGGATATCTCTAGCTGTCATCGTGTAAGAAAAA
ATGTATCCCAGGAAAACATGTGTTCTGCTTCTGCTGCTTTCAAGTCCAGCAAAATCAGCCTGCAAGTTGA
TAACTCTTTGATAACAAAATATGAAAATGCATTTCAGCACCGTGATCACTGCTGCCAAGGAACAGGACAC
TCTGTGGAAAAAAGCAGCTGTAAAGTGAGTTACACATCACAGGAAAGGGAACTTGATGGGAAAGAAACGA
ATGGCAGCCTTCCAGGAGATAAGATCAGAAACAAAATGGTAGCAGGCTTGTTAAATAGTGGAATTTCAAA
CAAAACCATTCACACCTCCAGTAGCATCAAACTCAGTGAGGAAGGGCTGGAAGGAAAGGAGCAGGATGTA
TCCAAAGAAACTGTATTTTGTAAGTATAACATCTCTGATCATGCTATACAAGAACTAAACCAGACTGTAA
ACATTCCAGGTCCTGAAAAAGTGTTGGACCAGTCTCCTACTGTTATGTTCTCCAGTTTTAAAAATGTAAA
ATCAGTTGAAACACTCGATCAGAAGGCAGATGAAGTCCTTGACTGTCAGAGTAACCAAAACAGACCAGAT
GAATGCAAAAGTGAAGGTCAGTCAGCCAAGGAGATGCTAAGTAGTGACCAGAGAGAGACTGTCACCGAGC
CTCACGGGGAGGTAAACCACAACCAAAAGGATCTGCTGGTCAGCTCAGGCAGTAATAACTCACTACCTTG
TGGTAGTCCAAAGAAATGCAATTTGAAAGGAGCCTTTGTCAAGATGTCTGGTTGTGATGAGTCCACAGAA
GGTATGGTAGACATCGTCTACACGGACTGTAGTAATAAGCTTGCAGAAGGTGTGCTGGACGTGAAGGCAT
CTAATCTACTGGATTGTGGTGCAAGGCAAGAGAAACTGGCATTTCAAGAGGACTCCAGGAGTACCTTGTC
TCGGAGAGAACTGGATGCTGCACATACAGGAACAACTGGTCAGGATTCAGATTTCCCAGTTACTGCTGCT
TCTACAGTGGACTTTCTCAAAATAAAAAAATCATGTGAAGAAAACGTATGCAGATCTTTAAAAGACTGTG
AAATGGAAAAGTGTCCAGACTCTTGTGCCCATGAGATGGAGTCTGTTGCAGATCATGAACCAAATAAAAG
AATATTGGGCAGAGTAAATTTGTCTTTAAATGATAGCCATTATGGACAGCAAGATAAAGGAACATCTCTC
AGAGAAACACAAGAAATGACTGAAGGATCAAGACTAGAACCAAACTCTGAGTTTGGCAAAGAAAGTACCT
TTGGAATTTCCTCAAAAGAGTCGATGTCTTGCCATGATGAAAGCTCTGTTTCCCTAAGAAGCCTGAAATC
CATTGAAATAATGCCTTCTCAAGAAAATTCAGAAACTAATGTTAACAGTGAAGAAACTGACCTGAAAAAT
CTTTGTAAACCAAAAGATGGTGAAATGCTTTGTGAAAATGTAAAGGACTGCACAGTCCTTCCTGAGATGA
AGGAAATAGTATCAAGAGATTGGAGTAATTCTAGTGACAGAGACAGCGTATGTACCTGTGTGGAAAAGAA
TGCTTGCAAAGCTTGTCACCCTCACGAGAATTCCTCTGACAGACATTTGCCTTTGACAGTGAAAACAGAT
ATTAAAGTGAAAGGAGAAGAAACCGAAGAGCATCAGAGGGGACGACTGGGTTACTTAACTGTTGGGGAGC
AATCTGAGGAGTTGGTTACCAGAGAAACTGGCGATGGCGATCCCGTGAGCAACATCTCTCAGACCCATTT
TAAATGCCGGGGGATACTTAATCATGCTGAAAAACAGCAGAGCCCTGAGGTTTTGGACTACATGTTGCAG
AAAGAAGAGAAATATATACGTCAACAAAAAGCACATACGATATCGCAACAGTGCATATCATCTAGTCTGT
TGTTAGATGATGCACAAAATCAGAACCAACCGAAGGCTGACAAAGATGAGTCCACCATGATCAATGAAAT
CACCCTAGCAAAGCTGGCCAAGGACAGCATTGTGGCACAGACTCAGAAGTTAGAAGACCAGAAGGAGGAA
AGGTTACATCATCCATTAAGGAAGGACACTGAGTCATGCACAAGTCCTTGCCTTCTTGGTGCCCCTCGGA
AAGCACAAGACCCCTCCTCTGCTGGGTGTGATCAAATACATGGTGCCTTTGCGAAGAAAGGAGTTCTTCC
CTTAAAGAAGCAGCCCCATCGAACTTGTAAGAAAGTTTCCTATCAGGAGCAAATCATTGTTGGGAGAAAA
ATAGGTAAAATCAGAAGTTCTGCCTTTTTAAAGAGTTCTTCCAATCCCATCCCCACAAAAGCGCACAGAC
TTCTCAGTTTGTGTACTCTGTCTGCACCTACACGATTAGAACCTGAAACAGCACCTACCAAGAGCTTGGT
TAGTCACATACCAAAGCAGATGTCTACACCGTGCCATCCCTTGAGGAGCCTGAATTTTAGGAAGACTACC
AAAGAATCAGCCTTACTAAACAAGCTGTCCATCCTTGCCTCCAAACTGGCCCCAGCCATGAAGACTCAGA
AGCTAAGATACCGACGGTGTTCCTCTGAACTTCTTCCAATGGCTAAAAGCTACAAGCGCCTCAGATATAA
AAGACTCCTGGACGGATTTTCATCCAGCACAGAGCAGCTGAATCCATATTTGGCAGCTAGTGGATGGGAT
AAGAGGCCTAACAGTAAGCCCATGGCACTTTATTCTCTCGAATCCATCAAGATGACCTTCATAGATTTGA
GCAACAAGATGCCGTCCCTGCTGTTTGGTTCTGAAATCTTCCCAGTATCCTTTCATGTGAAATCATCCAG
CTCAGATTGCACGACTGAGTCCTCAAGGACTTTTCCTGAGCACTGTGCTCCGGCAAGGCTTGCCTTAGGA
GAGGCCCTCCAGTGCCCGTCTCAACCTCCCAAGTGGACCTTTTCTTTCTTCTTGTCCCACGGTTGCCCTG
GGATGGCAACATTCAGGGAAGACACTGGCGTCCATAGTCAGACCCACACTCAGGCTCCTCCCCAGCCTCC
AGCTCCTCTCCAAGACTATGGAGGCACTGCCATAGTCCAGACCAGAGCAGACTGCTCTGTCCTTGGCCTT
CACACACTTCTAGCACTTTGTTCCCCAGGATGTTACCGAATCTGGACAAAAAAACGGAGCTTCTCCAGCC
ACATGCCTACCATGCAGAGGCTCTTCATGACCCAGTTTACACAGGGCCTGAAAGGGTTACGGTCTCCAGC
CTCCATAGCAGACAAGGTCTTCTGTTCTCTGCCCTACTCGGTGGGCAGAGTCCTATCCATTTGGAGCCAG
CATGGTCCTTCTGTCTGCTCCTTCGAAATCTCTTCTCTTCATTCCCCTCACTGCAAGCGGCAACCAAGTC
TGGGCACCACAAGCAGCCACACCATGTTACCATATGTGCCTCTTCCAGGCATGGAAGCTACATATAACAC
CAGCGGCAGTCAGACGAGGCTGGAGCCTCCATTCCCTGCCTTGGTACCAAAGTCTTGCTTGGTAGCAGAA
TCAGCTGTCAGCAAGCTCCTGCTTTCAGCCTCTGAGTTCCAGGTTCGTGGATTGGATGAGCTGGATGGTG
TGAAAGCAGCATGCCCCTGCCCACAGAGCAGCCCCCCAGAACAGAAAGAGGCTGAGCCAGAGAAGAGGCC
AAAGAAAGTCTCACAGATTCGCATCCGGAAAACCATTCCTAGGCCAGATCCTAATCTTACCCCCATGGGC
CTTCCTCGACCCAAAAGGTTAAAGAAGAAGGAGTTTAGTTTAGAAGAGATATATACCAACAAGAATTATA
AATCTCCTCCTGCAAACAGGTGTTTAGAGACCATCTTTGAGGAACCCAAGGAACGAAATGGTACACTAAT
CTCAATCAGCCAACAGAAGAGGAAGCGAGTTCTAGAATTTCAGGATTTTACAGTCCCGCGAAAGAGGAGA
GCTCGAGGCAAAGTCAAGGTGGCAGGCAGCTTTACCAGGGCCCAGAAGGCAGCTGTGCAGAGTCGAGAGC
TGGATGCTCTTTTGATACAGAAACTAATGGAACTGGAGACCTTCTTTGCCAAGGAAGAGGAGCAGGAACA
ATCATCAGGCTGTTGA

Translation (2151 aa):
MLSSGVETQPVPLDSSMSAVVQELYSELPVSVSRELHADPEPSVIPDVKPGASSSLLSQNRALPLELQRT
HVESCCEETYETLDHGSEPGRCGLVDSTAGGSVASGILDRAKRSESMEPKVFRDPGGQAGIIREPSEGAK
EDPHQHSTAAEEKTSPSQEDLLMQSSKELSHVDLPEDFLRSKEGNVQITAETLLKSAEVQGMKVNGTKTD
NNEGHKNGNVSKDLSAGCGEFQEVDKIMTSDEVSETSTLVTPEPLTFVDPVLTEATPKEKECEELKSCPW
LSLPGNSAISNVDNGKEELCKPNLVCEADDNHQQLHGHHNEQPSSTHDSPTATSPLKENSEVSCFTSDLS
GPESRTISLENCGFEGGGLLKRSAEKTDSSYFYRGDDQGKNLASREENEERLLIPRSERGGPFLFNAREP
EKEISGRCSGEKEPVVSPKENIHNNCIQDSLHTGNSSSLMPNSFTEATEVMLNKNDLKITVHVQGNLTNP
EDHKETFTNMSHPGGHSEESSFSSLMQIEEAGQTTPVEPNILSKSFYTKDCNSLVSIQRNLEGNTQLNEA
SCNDFLFERKSIVSLMPEDQISPVSEVLKPKQGTALLLPSPEFDYRPESEKVIQTSHDDIPLLDEQSIAC
EMNELSCTNELVVNKVESECVLNQQVSLNSQEHANLPTDSLLHLNKEMPLATGRDAHQSHHPPLEGRADV
IADIQTIPIQTKIKDISPPGNQTCGASSNCPTLNIKPVSLERKKEMADSGTKALHSRLRSNKREAAGFPQ
VVSVIECHSVQSQDISSCHRVRKNVSQENMCSASAAFKSSKISLQVDNSLITKYENAFQHRDHCCQGTGH
SVEKSSCKVSYTSQERELDGKETNGSLPGDKIRNKMVAGLLNSGISNKTIHTSSSIKLSEEGLEGKEQDV
SKETVFCKYNISDHAIQELNQTVNIPGPEKVLDQSPTVMFSSFKNVKSVETLDQKADEVLDCQSNQNRPD
ECKSEGQSAKEMLSSDQRETVTEPHGEVNHNQKDLLVSSGSNNSLPCGSPKKCNLKGAFVKMSGCDESTE
GMVDIVYTDCSNKLAEGVLDVKASNLLDCGARQEKLAFQEDSRSTLSRRELDAAHTGTTGQDSDFPVTAA
STVDFLKIKKSCEENVCRSLKDCEMEKCPDSCAHEMESVADHEPNKRILGRVNLSLNDSHYGQQDKGTSL
RETQEMTEGSRLEPNSEFGKESTFGISSKESMSCHDESSVSLRSLKSIEIMPSQENSETNVNSEETDLKN
LCKPKDGEMLCENVKDCTVLPEMKEIVSRDWSNSSDRDSVCTCVEKNACKACHPHENSSDRHLPLTVKTD
IKVKGEETEEHQRGRLGYLTVGEQSEELVTRETGDGDPVSNISQTHFKCRGILNHAEKQQSPEVLDYMLQ
KEEKYIRQQKAHTISQQCISSSLLLDDAQNQNQPKADKDESTMINEITLAKLAKDSIVAQTQKLEDQKEE
RLHHPLRKDTESCTSPCLLGAPRKAQDPSSAGCDQIHGAFAKKGVLPLKKQPHRTCKKVSYQEQIIVGRK
IGKIRSSAFLKSSSNPIPTKAHRLLSLCTLSAPTRLEPETAPTKSLVSHIPKQMSTPCHPLRSLNFRKTT
KESALLNKLSILASKLAPAMKTQKLRYRRCSSELLPMAKSYKRLRYKRLLDGFSSSTEQLNPYLAASGWD
KRPNSKPMALYSLESIKMTFIDLSNKMPSLLFGSEIFPVSFHVKSSSSDCTTESSRTFPEHCAPARLALG
EALQCPSQPPKWTFSFFLSHGCPGMATFREDTGVHSQTHTQAPPQPPAPLQDYGGTAIVQTRADCSVLGL
HTLLALCSPGCYRIWTKKRSFSSHMPTMQRLFMTQFTQGLKGLRSPASIADKVFCSLPYSVGRVLSIWSQ
HGPSVCSFEISSLHSPHCKRQPSLGTTSSHTMLPYVPLPGMEATYNTSGSQTRLEPPFPALVPKSCLVAE
SAVSKLLLSASEFQVRGLDELDGVKAACPCPQSSPPEQKEAEPEKRPKKVSQIRIRKTIPRPDPNLTPMG
LPRPKRLKKKEFSLEEIYTNKNYKSPPANRCLETIFEEPKERNGTLISISQQKRKRVLEFQDFTVPRKRR
ARGKVKVAGSFTRAQKAAVQSRELDALLIQKLMELETFFAKEEEQEQSSGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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