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Report for CCDS5707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5707.1 Public Homo sapiens 7 SLC12A9 24 110 108 CCDS HistoryNCBI Gene:56996Re-query CCDS DB by CCDS ID:5707.1Re-query CCDS DB by GeneID:56996See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5707.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354161.8 ENSP00000275730.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354161.8Link to Ensembl Protein Viewer:ENSP00000275730.4Re-query CCDS DB by Nucleotide ID:ENST00000354161Re-query CCDS DB by Protein ID:ENSP00000275730
Original member Current member NCBI NM_001363493.2 NP_001350422.1 Accepted alive Link to Nucleotide Sequence:NM_001363493.2Link to Protein Sequence:NP_001350422.1Re-query CCDS DB by Nucleotide ID:NM_001363493Re-query CCDS DB by Protein ID:NP_001350422Link to BLAST:NP_001350422.1
Original member Current member NCBI NM_020246.4 NP_064631.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020246.4Link to Protein Sequence:NP_064631.2Re-query CCDS DB by Nucleotide ID:NM_020246Re-query CCDS DB by Protein ID:NP_064631Link to BLAST:NP_064631.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350422.1 914 Q9BXP2-1 914 100% 0 0
NP_064631.2 914 Q9BXP2-1 914 100% 0 0

Chromosomal Locations for CCDS 5707.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100854198 100854378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100854620 100854754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100855706 100855837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100856868 100857176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100858835 100858942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100859050 100859161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100859885 100860042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100860150 100860232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100861138 100861262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100861392 100861584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100861737 100861911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100862681 100862827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100865719 100866605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2745 nt):
ATGGCCAGCGAGAGCTCACCTCTGCTGGCCTACCGGCTCCTGGGGGAGGAGGGGGTTGCCCTCCCTGCCA
ATGGGGCCGGGGGTCCTGGAGGGGCGTCTGCCCGGAAGCTGTCCACCTTCCTGGGTGTGGTGGTGCCCAC
TGTCCTGTCCATGTTCAGCATAGTTGTTTTTCTGAGGATTGGGTTCGTGGTGGGTCATGCTGGGCTACTG
CAGGCCCTGGCCATGCTGCTGGTTGCCTACTTCATCCTGGCACTCACCGTCCTCTCTGTCTGTGCCATCG
CCACCAATGGAGCCGTGCAGGGGGGCGGAGCCTACTTCATGATCAGCCGCACACTGGGGCCCGAGGTCGG
GGGCAGCATTGGGCTCATGTTCTACCTGGCTAACGTCTGTGGCTGTGCCGTCTCCCTCCTGGGGCTGGTG
GAGTCTGTGCTTGATGTCTTCGGGGCCGATGCCACAGGGCCCAGTGGGCTCCGGGTCCTGCCCCAGGGCT
ACGGCTGGAACCTGCTGTATGGCTCCCTGCTGCTGGGCCTTGTGGGTGGGGTCTGCACCCTGGGAGCCGG
CCTCTATGCCCGGGCCTCATTCCTCACATTCCTGCTGGTCTCTGGCTCCCTGGCCTCTGTGCTCATCAGT
TTTGTGGCTGTGGGGCCGAGGGACATCCGCTTGACTCCTAGGCCTGGCCCCAATGGCTCCTCCCTGCCGC
CCCGGTTTGGCCACTTCACCGGCTTCAACAGCAGTACCCTGAAGGACAACTTGGGCGCTGGCTATGCTGA
GGACTACACCACGGGAGCCGTGATGAATTTTGCCAGCGTCTTTGCTGTCCTCTTTAACGGCTGTACAGGC
ATCATGGCTGGGGCCAACATGTCAGGGGAGCTGAAGGACCCCAGCCGGGCGATCCCTCTGGGCACGATCG
TCGCCGTCGCCTACACCTTCTTCGTCTATGTCCTGCTTTTCTTTCTCTCCAGCTTCACTTGTGACAGGAC
CCTGCTGCAGGAAGACTATGGGTTCTTCCGCGCCATCAGCCTGTGGCCCCCACTGGTGTTGATCGGAATC
TATGCCACAGCGCTCTCAGCGTCCATGAGCTCGCTCATTGGTGCCTCCCGCATCCTCCATGCCCTGGCCC
GGGATGACCTCTTTGGCGTGATCTTGGCACCGGCCAAGGTTGTGTCCCGAGGGGGAAACCCCTGGGCAGC
TGTACTTTATTCTTGGGGCCTGGTGCAGCTGGTGCTCCTGGCTGGGAAGCTGAACACACTGGCTGCTGTG
GTCACTGTCTTCTACCTGGTGGCCTATGCTGCCGTGGACCTGTCCTGCCTGAGCCTGGAGTGGGCCTCGG
CCCCCAACTTCCGCCCCACCTTCAGCCTGTTCTCCTGGCACACCTGCCTGCTGGGGGTGGCCTCCTGCCT
GCTCATGATGTTCCTCATCAGTCCTGGCGCGGCTGGTGGCTCCCTGCTCCTCATGGGTCTGCTGGCTGCC
CTGCTCACCGCGCGAGGAGGCCCCAGTAGCTGGGGCTATGTCAGCCAGGCCTTGCTTTTCCACCAGGTGC
GTAAGTATCTGCTTCGGCTGGACGTCCGGAAGGATCACGTGAAGTTCTGGCGGCCCCAGCTGCTGCTCCT
GGTGGGGAACCCCCGGGGCGCCCTGCCTCTGCTGCGGTTGGCCAACCAGCTTAAGAAGGGGGGGCTGTAT
GTGCTGGGCCACGTCACCCTGGGAGACCTCGACTCCCTGCCCTCGGACCCTGTACAGCCGCAGTATGGGG
CATGGCTCAGCCTGGTGGACCGTGCCCAGGTGAAGGCTTTTGTGGATCTAACCCTCTCACCCTCCGTGCG
CCAGGGGGCTCAGCATCTGCTGCGAATCTCCGGCCTCGGTGGCATGAAGCCCAACACGTTGGTCCTAGGT
TTCTACGATGACGCTCCACCGCAGGACCATTTCCTGACGGACCCGGCTTTCTCTGAGCCTGCAGACAGCA
CCAGGGAGGGCAGTTCCCCAGCTCTGAGCACCCTGTTCCCTCCTCCCCGGGCTCCTGGGAGCCCCCGGGC
CCTCAATCCCCAGGACTATGTGGCCACGGTGGCCGACGCCCTCAAGATGAACAAGAATGTGGTGCTGGCC
CGGGCCAGCGGGGCCTTGCCCCCTGAGCGGCTGAGCCGGGGGTCTGGGGGCACCTCTCAGCTGCACCATG
TGGACGTGTGGCCCCTCAACCTGCTGCGGCCCCGGGGTGGGCCCGGCTATGTGGATGTCTGCGGCCTCTT
CCTGCTGCAGATGGCAACCATCTTGGGCATGGTGCCCGCTTGGCATAGCGCCCGGCTCCGGATCTTCCTG
TGCCTGGGGCCTCGGGAGGCGCCTGGGGCGGCCGAGGGGCGGCTGCGGGCACTGCTGAGCCAACTGAGGA
TCCGGGCTGAGGTGCAGGAGGTGGTGTGGGGCGAGGGGGCCGGGGCTGGGGAACCCGAGGCGGAGGAGGA
AGGGGACTTTGTGAACAGTGGGCGGGGAGACGCAGAGGCAGAGGCCCTGGCACGCAGCGCCAACGCCCTG
GTTCGGGCCCAGCAGGGGCGCGGCACAGGAGGAGGGCCGGGTGGGCCGGAGGGTGGGGATGCTGAGGGCC
CCATCACAGCCCTCACCTTCCTGTACTTGCCTCGGCCGCCAGCCGATCCCGCCCGATACCCCCGCTACCT
GGCGCTACTGGAGACTCTAACCCGAGACCTGGGCCCCACGCTGCTGGTTCATGGGGTCACTCCAGTCACC
TGCACTGATCTGTGA

Translation (914 aa):
MASESSPLLAYRLLGEEGVALPANGAGGPGGASARKLSTFLGVVVPTVLSMFSIVVFLRIGFVVGHAGLL
QALAMLLVAYFILALTVLSVCAIATNGAVQGGGAYFMISRTLGPEVGGSIGLMFYLANVCGCAVSLLGLV
ESVLDVFGADATGPSGLRVLPQGYGWNLLYGSLLLGLVGGVCTLGAGLYARASFLTFLLVSGSLASVLIS
FVAVGPRDIRLTPRPGPNGSSLPPRFGHFTGFNSSTLKDNLGAGYAEDYTTGAVMNFASVFAVLFNGCTG
IMAGANMSGELKDPSRAIPLGTIVAVAYTFFVYVLLFFLSSFTCDRTLLQEDYGFFRAISLWPPLVLIGI
YATALSASMSSLIGASRILHALARDDLFGVILAPAKVVSRGGNPWAAVLYSWGLVQLVLLAGKLNTLAAV
VTVFYLVAYAAVDLSCLSLEWASAPNFRPTFSLFSWHTCLLGVASCLLMMFLISPGAAGGSLLLMGLLAA
LLTARGGPSSWGYVSQALLFHQVRKYLLRLDVRKDHVKFWRPQLLLLVGNPRGALPLLRLANQLKKGGLY
VLGHVTLGDLDSLPSDPVQPQYGAWLSLVDRAQVKAFVDLTLSPSVRQGAQHLLRISGLGGMKPNTLVLG
FYDDAPPQDHFLTDPAFSEPADSTREGSSPALSTLFPPPRAPGSPRALNPQDYVATVADALKMNKNVVLA
RASGALPPERLSRGSGGTSQLHHVDVWPLNLLRPRGGPGYVDVCGLFLLQMATILGMVPAWHSARLRIFL
CLGPREAPGAAEGRLRALLSQLRIRAEVQEVVWGEGAGAGEPEAEEEGDFVNSGRGDAEAEALARSANAL
VRAQQGRGTGGGPGGPEGGDAEGPITALTFLYLPRPPADPARYPRYLALLETLTRDLGPTLLVHGVTPVT
CTDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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