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Report for CCDS13590.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13590.2 Public Homo sapiens 21 KRTAP13-1 24 110 108 CCDS HistoryNCBI Gene:140258Re-query CCDS DB by CCDS ID:13590.2Re-query CCDS DB by GeneID:140258See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 13590.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355459.4 ENSP00000347635.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355459.4Link to Ensembl Protein Viewer:ENSP00000347635.2Re-query CCDS DB by Nucleotide ID:ENST00000355459Re-query CCDS DB by Protein ID:ENSP00000347635
Original member Current member NCBI NM_181599.3 NP_853630.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181599.3Link to Protein Sequence:NP_853630.2Re-query CCDS DB by Nucleotide ID:NM_181599Re-query CCDS DB by Protein ID:NP_853630Link to BLAST:NP_853630.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853630.2 172 Q8IUC0 172 100% 0 0

Chromosomal Locations for CCDS 13590.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 30396087 30396605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGTCCTACAACTGCTGCTCTGGAAACTTCTCCTCCCGCTCCTGTGGTGGCTACCTGCACTACCCAGCCT
CCTCCTGTGGCTTTTCCTACCCCAGCAACCAGGTCTACAGCACTGACCTCTGCTCTCCCAGCACGTGCCA
GCTGGGTTCCTCTCTCTATAGGGGCTGTCAGCAGACCTGCTGGGAGCCCACCAGCTGCCAGACATCCTAT
GTGGAGTCCAGCCCCTGCCAGACCTCCTGCTACCGTCCCAGAACCTCCTTGCTCTGCAGTCCCTGCCAGA
CAACTTACTCTGGGTCTCTAGGCTTTGGATCCAGCAGCTGCCGCTCCCTGGGCTATGGATCGAGGAGCTG
CTACTCAGTGGGCTGTGGGTCCAGTGGCTTCAGATCCCTGGGTTATGGAGGCTGTGGCTTCCCTTCCCTG
GGCTATGGCGTTGGATTCTGCCGCCCAACCTACTTGGCTTCTAGGAGCTGCCAGTCTTCTTGCTACAGAC
CAACTTGTGGATCAGGCTTCTACTATTGA

Translation (172 aa):
MSYNCCSGNFSSRSCGGYLHYPASSCGFSYPSNQVYSTDLCSPSTCQLGSSLYRGCQQTCWEPTSCQTSY
VESSPCQTSCYRPRTSLLCSPCQTTYSGSLGFGSSSCRSLGYGSRSCYSVGCGSSGFRSLGYGGCGFPSL
GYGVGFCRPTYLASRSCQSSCYRPTCGSGFYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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