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Report for CCDS41888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41888.1 Public Homo sapiens 13 TRIM13 24 110 108 CCDS HistoryNCBI Gene:10206Re-query CCDS DB by CCDS ID:41888.1Re-query CCDS DB by GeneID:10206See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41888.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356017.8 ENSP00000348299.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356017.8Link to Ensembl Protein Viewer:ENSP00000348299.4Re-query CCDS DB by Nucleotide ID:ENST00000356017Re-query CCDS DB by Protein ID:ENSP00000348299
Original member Current member NCBI NM_001007278.3 NP_001007279.1 Accepted alive Link to Nucleotide Sequence:NM_001007278.3Link to Protein Sequence:NP_001007279.1Re-query CCDS DB by Nucleotide ID:NM_001007278Re-query CCDS DB by Protein ID:NP_001007279Link to BLAST:NP_001007279.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007279.1 410 O60858-3 410 100% 0 0

Chromosomal Locations for CCDS 41888.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 50001106 50001108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 50011935 50013164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGATGTGATGGAGCTGCTTGAAGAAGATCTCACATGCCCTATTTGTTGTAGTCTGTTTGATGATCCAC
GGGTTTTGCCTTGCTCCCACAACTTCTGCAAAAAATGCTTAGAAGGTATCTTAGAAGGGAGTGTGCGGAA
TTCCTTGTGGAGACCAGCTCCATTCAAGTGTCCTACATGCCGTAAGGAAACTTCAGCTACTGGAATTAAT
AGCCTGCAGGTTAATTACTCCCTGAAGGGTATTGTGGAAAAGTATAACAAGATCAAGATCTCTCCCAAAA
TGCCAGTATGCAAAGGACACTTGGGGCAGCCTCTCAACATTTTCTGCCTGACTGATATGCAGCTGATTTG
TGGGATCTGTGCTACTCGTGGGGAGCACACCAAACATGTCTTCTGTTCTATTGAAGATGCCTATGCTCAG
GAAAGGGATGCCTTTGAGTCCCTCTTCCAGAGCTTTGAGACCTGGCGTCGGGGAGATGCTCTTTCTCGCT
TGGATACCTTGGAAACTAGTAAGAGGAAATCCCTACAGTTACTGACTAAAGATTCAGATAAAGTGAAGGA
ATTTTTTGAGAAGTTACAACACACACTGGATCAAAAGAAGAATGAAATTCTGTCTGACTTTGAGACCATG
AAACTTGCTGTTATGCAAGCATATGACCCAGAGATCAACAAACTCAACACCATCTTGCAGGAGCAACGGA
TGGCCTTTAACATTGCTGAGGCTTTCAAAGATGTGTCAGAACCCATTGTATTTCTGCAACAGATGCAGGA
GTTTAGAGAGAAAATCAAAGTAATCAAGGAAACTCCTTTACCTCCCTCTAATTTGCCTGCAAGCCCTTTA
ATGAAGAACTTTGATACCAGTCAGTGGGAAGACATAAAACTAGTCGATGTGGATAAACTTTCTTTGCCTC
AAGACACTGGCACATTCATTAGCAAGATTCCCTGGAGCTTTTATAAGTTATTTTTGCTAATCCTTCTGCT
TGGCCTTGTCATTGTCTTTGGTCCTACCATGTTCCTAGAATGGTCATTATTTGATGACCTGGCAACTTGG
AAAGGCTGTCTTTCAAACTTCAGTTCCTATCTGACTAAAACAGCCGATTTCATAGAACAATCAGTTTTTT
ACTGGGAACAGGTGACAGATGGGTTTTTCATTTTCAATGAAAGATTCAAGAATTTTACTTTGGTGGTACT
GAACAATGTGGCAGAATTTGTGTGCAAATATAAACTATTATAA

Translation (410 aa):
MDVMELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRPAPFKCPTCRKETSATGIN
SLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGICATRGEHTKHVFCSIEDAYAQ
ERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETM
KLAVMQAYDPEINKLNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKIKVIKETPLPPSNLPASPL
MKNFDTSQWEDIKLVDVDKLSLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATW
KGCLSNFSSYLTKTADFIEQSVFYWEQVTDGFFIFNERFKNFTLVVLNNVAEFVCKYKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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