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Report for CCDS5071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5071.1 Public Homo sapiens 6 CEP57L1 24 110 108 CCDS HistoryNCBI Gene:285753Re-query CCDS DB by CCDS ID:5071.1Re-query CCDS DB by GeneID:285753See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 5071.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359793.7 ENSP00000352841.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359793.7Link to Ensembl Protein Viewer:ENSP00000352841.3Re-query CCDS DB by Nucleotide ID:ENST00000359793Re-query CCDS DB by Protein ID:ENSP00000352841
Original member Current member EBI ENST00000517392.6 ENSP00000427844.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000517392.6Link to Ensembl Protein Viewer:ENSP00000427844.1Re-query CCDS DB by Nucleotide ID:ENST00000517392Re-query CCDS DB by Protein ID:ENSP00000427844
Original member Current member NCBI NM_001083535.3 NP_001077004.1 Accepted alive Link to Nucleotide Sequence:NM_001083535.3Link to Protein Sequence:NP_001077004.1Re-query CCDS DB by Nucleotide ID:NM_001083535Re-query CCDS DB by Protein ID:NP_001077004Link to BLAST:NP_001077004.1
Original member Current member NCBI NM_001271852.3 NP_001258781.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271852.3Link to Protein Sequence:NP_001258781.1Re-query CCDS DB by Nucleotide ID:NM_001271852Re-query CCDS DB by Protein ID:NP_001258781Link to BLAST:NP_001258781.1
Original member Current member NCBI NM_001350652.2 NP_001337581.1 Accepted alive Link to Nucleotide Sequence:NM_001350652.2Link to Protein Sequence:NP_001337581.1Re-query CCDS DB by Nucleotide ID:NM_001350652Re-query CCDS DB by Protein ID:NP_001337581Link to BLAST:NP_001337581.1
Original member Current member NCBI NM_001350653.2 NP_001337582.1 Accepted alive Link to Nucleotide Sequence:NM_001350653.2Link to Protein Sequence:NP_001337582.1Re-query CCDS DB by Nucleotide ID:NM_001350653Re-query CCDS DB by Protein ID:NP_001337582Link to BLAST:NP_001337582.1
Original member Current member NCBI NM_173830.6 NP_776191.1 Accepted alive Link to Nucleotide Sequence:NM_173830.6Link to Protein Sequence:NP_776191.1Re-query CCDS DB by Nucleotide ID:NM_173830Re-query CCDS DB by Protein ID:NP_776191Link to BLAST:NP_776191.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077004.1 460 Q8IYX8-1 460 100% 0 0
NP_001258781.1 460 Q8IYX8-1 460 100% 0 0
NP_001337581.1 460 Q8IYX8-1 460 100% 0 0
NP_001337582.1 460 Q8IYX8-1 460 100% 0 0
NP_776191.1 460 Q8IYX8-1 460 100% 0 0

Chromosomal Locations for CCDS 5071.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 109145222 109145381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109146758 109146937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109150118 109150239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109153833 109153949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109155230 109155307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109155791 109155877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109159025 109159102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109159269 109159462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109160572 109160716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 109162749 109162970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGATTCTGAATTAATGCATAGTATAGTAGGAAGCTATCATAAACCTCCAGAAAGAGTATTTGTTCCCT
CATTCACCCAGAATGAACCATCTCAGAATTGCCATCCTGCAAACTTAGAAGTTACCTCTCCTAAGATACT
TCATAGCCCAAATAGCCAAGCTCTTATTTTAGCCTTAAAAACTCTTCAGGAAAAAATTCATCGTTTAGAG
CTGGAGAGAACACAAGCTGAAGATAACCTGAACATTCTTTCCAGAGAAGCAGCACAGTATAAGAAGGCCT
TAGAGAATGAAACAAATGAGAGAAATCTGGCACACCAGGAGCTGATAAAGCAGAAAAAAGATATAAGTAT
ACAGTTAAGCTCAGCCCAGTCTCGTTGTACTCTTCTAGAGAAGCAACTAGAATATACAAAGAGAATGGTT
CTCAACGTAGAGCGAGAAAAGAACATGATCCTAGAACAACAGGCCCAGCTTCAGAGGGAAAAAGAACAAG
ATCAGATGAAGCTGTATGCAAAACTTGAAAAGCTTGATGTCTTAGAAAAAGAGTGTTTCAGACTTACAAC
AACTCAGAAAACTGCTGAGGACAAGATTAAACATTTAGAAGAAAAACTTAAGGAAGAAGAACATCAGCGT
AAGCTATTTCAAGACAAAGCTTCTGAGCTTCAAACTGGACTTGAAATCAGTAAAATTATAATGTCTTCAG
TTTCAAATCTAAAGCACTCCAAGGAAAAGAAGAAATCTTCAAAGAAAACTAAATGTATAAAGAGACGACC
ACCTTGGCAAATTTGTTCAAAGTTTGGAGCACTGCCTTTTGTGGCTGAAAAGATGAGGCAACATCGTGAC
CCACATATCCTTCAGAAACCTTTTAACGTGACTGAGACTAGATGTCTCCCCAAGCCTTCTAGAACAACTT
CCTGGTGTAAAGCTATTCCTCCTGACTCAGAAAAGTCCATTTCCATTTGTGACAATTTATCTGAACTTTT
GATGGCAATGCAAGATGAGCTGGACCAAATGAGCATGGAGCACCAAGAACTACTGAAACAAATGAAGGAA
ACTGAAAGTCATTCAGTCTGTGACGACATAGAATGTGAACTAGAGTGTTTACTCAAGAAAATGGAAATTA
AAGGAGAACAAATCTCCAAACTGAAGAAGCATCAAGACAGTGTCTGTAAACTGCAGCAAAAAGTTCAAAA
CTCAAAGATGAGTGAAGCTTCAGGTATTCAGCAAGAAGACAGCTACCCTAAAGGATCAAAGAACATAAAA
AATAGCCCCAGAAAATGTTTGACTGACACTAACCTTTTTCAGAAAAACAGCAGCTTTCATCCAATACGAG
TTCATAATCTTCAAATGAAATTGAGAAGAGATGATATCATGTGGGAACAGTAA

Translation (460 aa):
MDSELMHSIVGSYHKPPERVFVPSFTQNEPSQNCHPANLEVTSPKILHSPNSQALILALKTLQEKIHRLE
LERTQAEDNLNILSREAAQYKKALENETNERNLAHQELIKQKKDISIQLSSAQSRCTLLEKQLEYTKRMV
LNVEREKNMILEQQAQLQREKEQDQMKLYAKLEKLDVLEKECFRLTTTQKTAEDKIKHLEEKLKEEEHQR
KLFQDKASELQTGLEISKIIMSSVSNLKHSKEKKKSSKKTKCIKRRPPWQICSKFGALPFVAEKMRQHRD
PHILQKPFNVTETRCLPKPSRTTSWCKAIPPDSEKSISICDNLSELLMAMQDELDQMSMEHQELLKQMKE
TESHSVCDDIECELECLLKKMEIKGEQISKLKKHQDSVCKLQQKVQNSKMSEASGIQQEDSYPKGSKNIK
NSPRKCLTDTNLFQKNSSFHPIRVHNLQMKLRRDDIMWEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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