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Report for CCDS46607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46607.1 Public Homo sapiens 20 MATN4 24 110 108 CCDS HistoryNCBI Gene:8785Re-query CCDS DB by CCDS ID:46607.1Re-query CCDS DB by GeneID:8785See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46607.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360607.10 ENSP00000353819.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360607.10Link to Ensembl Protein Viewer:ENSP00000353819.5Re-query CCDS DB by Nucleotide ID:ENST00000360607Re-query CCDS DB by Protein ID:ENSP00000353819
Original member Current member NCBI NM_030590.4 NP_085080.1 Accepted alive Link to Nucleotide Sequence:NM_030590.4Link to Protein Sequence:NP_085080.1Re-query CCDS DB by Nucleotide ID:NM_030590Re-query CCDS DB by Protein ID:NP_085080Link to BLAST:NP_085080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_085080.1 540 O95460-4 540 100% 0 0

Chromosomal Locations for CCDS 46607.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45293767 45293825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45293908 45294015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45297918 45298070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45298170 45298583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45300887 45301009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45301102 45301224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45304228 45304797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45305510 45305582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGAGAGGCCTTCTTTGCTGGCCCGTGTTGCTGCTCCTTCTTCAGCCCTGGGAAACCCAGCTCCAGTTGA
CAGGTCCCAGGTGTCACACTGGGCCCCTGGATCTGGTGTTCGTGATTGACAGCTCCCGCAGCGTGCGCCC
TTTCGAGTTCGAGACCATGCGGCAGTTCCTCATGGGCCTCCTCCGAGGCCTGAACGTGGGTCCCAACGCC
ACGCGCGTTGGCGTGATCCAGTATTCGAGTCAAGTGCAGAGCGTCTTCCCTCTCCGCGCGTTCTCTCGCC
GCGAGGACATGGAGCGCGCCATCCGCGACCTGGTGCCTCTGGCGCAAGGCACCATGACGGGACTGGCAAT
CCAGTACGCCATGAACGTGGCCTTCAGTGTGGCCGAGGGCGCGCGACCGCCAGAGGAGCGCGTGCCGCGT
GTCGCTGTCATCGTGACAGACGGGCGGCCCCAGGACCGCGTGGCCGAGGTGGCGGCACAGGCGCGCGCCC
GCGGCATTGAAATTTACGCGGTGGGGGTGCAGCGCGCGGACGTGGGCTCCCTGCGCGCCATGGCATCGCC
CCCGCTAGACGAGCACGTCTTCCTCGTAGAGTCCTTCGACCTCATCCAGGAGTTCGGCCTGCAGTTCCAG
AGCCGGCTGTGTGCCATTGACTACTGCAGCTTTGGGAACCATAGCTGTCAGCATGAGTGTGTTAGCACCC
CTGGTGGGCCACGGTGCCACTGCAGAGAGGGCCATGACTTGCAGCCTGATGGGAGGAGCTGTCAGGTCCG
GGACCTTTGCAATGGCGTGGACCATGGCTGTGAGTTCCAGTGTGTGAGCGAGGGCCTCTCCTACCGCTGC
CTGTGCCCCGAGGGGCGGCAACTTCAGGCAGATGGCAAGAGCTGCAACCGGTGCCGGGAAGGCCACGTGG
ACCTTGTTCTGCTGGTTGATGGCTCCAAGAGCGTGCGTCCACAAAACTTCGAGCTAGTGAAGCGCTTCGT
GAACCAGATTGTGGACTTCCTAGATGTGTCCCCCGAGGGCACGCGGGTGGGGCTGGTGCAGTTCTCGAGC
CGCGTGCGCACCGAGTTCCCTCTGGGTCGCTACGGCACCGCAGCCGAGGTGAAGCAGGCGGTCCTGGCCG
TGGAGTACATGGAACGCGGCACCATGACAGGGCTGGCGTTGCGGCACATGGTGGAGCACAGCTTCTCCGA
GGCGCAGGGTGCACGGCCCCGTGCCCTTAACGTGCCTCGTGTTGGCCTGGTCTTCACGGATGGCCGCTCC
CAGGATGACATCTCGGTGTGGGCAGCGCGCGCCAAGGAGGAAGGCATCGTCATGTACGCCGTGGGCGTGG
GCAAGGCGGTGGAGGCGGAGCTGCGCGAGATCGCCTCGGAGCCAGCGGAACTGCACGTGTCCTATGCCCC
GGACTTCGGCACCATGACGCACCTGCTGGAGAACCTCAGAGGCAGCATCTGTCCAGAGGAGGGCATCAGC
GCAGGGACAGAGCTTCGGAGCCCATGCGAATGCGAAAGCCTCGTGGAGTTCCAGGGCCGCACGCTGGGGG
CGCTCGAGAGCCTGACGCTGAACCTGGCCCAGCTGACGGCGCGCCTGGAGGATCTGGAGAACCAGCTGGC
CAACCAGAAGTGA

Translation (540 aa):
MRGLLCWPVLLLLLQPWETQLQLTGPRCHTGPLDLVFVIDSSRSVRPFEFETMRQFLMGLLRGLNVGPNA
TRVGVIQYSSQVQSVFPLRAFSRREDMERAIRDLVPLAQGTMTGLAIQYAMNVAFSVAEGARPPEERVPR
VAVIVTDGRPQDRVAEVAAQARARGIEIYAVGVQRADVGSLRAMASPPLDEHVFLVESFDLIQEFGLQFQ
SRLCAIDYCSFGNHSCQHECVSTPGGPRCHCREGHDLQPDGRSCQVRDLCNGVDHGCEFQCVSEGLSYRC
LCPEGRQLQADGKSCNRCREGHVDLVLLVDGSKSVRPQNFELVKRFVNQIVDFLDVSPEGTRVGLVQFSS
RVRTEFPLGRYGTAAEVKQAVLAVEYMERGTMTGLALRHMVEHSFSEAQGARPRALNVPRVGLVFTDGRS
QDDISVWAARAKEEGIVMYAVGVGKAVEAELREIASEPAELHVSYAPDFGTMTHLLENLRGSICPEEGIS
AGTELRSPCECESLVEFQGRTLGALESLTLNLAQLTARLEDLENQLANQK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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