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Report for CCDS432.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
432.1 Public Homo sapiens 1 GJA9 24 110 108 CCDS HistoryNCBI Gene:81025Re-query CCDS DB by CCDS ID:432.1Re-query CCDS DB by GeneID:81025See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 432.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357771.5 ENSP00000350415.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357771.5Link to Ensembl Protein Viewer:ENSP00000350415.3Re-query CCDS DB by Nucleotide ID:ENST00000357771Re-query CCDS DB by Protein ID:ENSP00000350415
Original member Current member EBI ENST00000360786.3 ENSP00000354020.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360786.3Link to Ensembl Protein Viewer:ENSP00000354020.3Re-query CCDS DB by Nucleotide ID:ENST00000360786Re-query CCDS DB by Protein ID:ENSP00000354020
Original member Current member NCBI NM_030772.5 NP_110399.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030772.5Link to Protein Sequence:NP_110399.2Re-query CCDS DB by Nucleotide ID:NM_030772Re-query CCDS DB by Protein ID:NP_110399Link to BLAST:NP_110399.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110399.2 515 P57773-1 515 100% 0 0

Chromosomal Locations for CCDS 432.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 38874551 38876098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGGGGACTGGAATCTCCTTGGAGATACTCTGGAGGAAGTTCACATCCACTCCACCATGATTGGAAAGA
TCTGGCTCACCATCCTGTTCATATTTCGAATGCTTGTTCTGGGTGTAGCAGCTGAAGATGTCTGGAATGA
TGAGCAGTCTGGCTTCATCTGCAATACAGAACAACCAGGCTGCAGAAATGTATGCTACGACCAGGCCTTT
CCTATCTCCCTCATTAGATACTGGGTTCTGCAGGTGATATTTGTGTCTTCACCATCCCTGGTCTACATGG
GCCATGCATTGTACCGACTGAGAGTTCTTGAGGAAGAGAGGCAAAGGATGAAAGCTCAGTTAAGAGTAGA
ACTGGAGGAGGTAGAGTTTGAAATGCCTAGGGATCGGAGGAGATTGGAGCAAGAGCTTTGTCAGCTGGAG
AAAAGGAAACTAAATAAAGCTCCACTCAGAGGAACCTTGCTTTGCACTTATGTGATACACATTTTCACTC
GCTCTGTGGTTGAAGTTGGATTCATGATTGGACAGTACCTTTTATATGGATTTCACTTAGAGCCGCTATT
TAAGTGCCATGGCCACCCGTGTCCAAATATAATCGACTGTTTTGTCTCAAGACCAACAGAAAAGACAATA
TTCCTATTATTTATGCAATCTATAGCCACTATTTCACTTTTCTTAAACATTCTTGAAATTTTCCACCTAG
GTTTTAAAAAGATTAAAAGAGGGCTTTGGGGAAAATACAAGTTGAAGAAGGAACATAATGAATTCCATGC
AAACAAGGCAAAACAAAATGTAGCCAAATACCAGAGCACATCTGCAAATTCACTGAAGCGACTCCCTTCT
GCCCCTGATTATAATCTGTTAGTGGAAAAGCAAACACACACTGCAGTGTACCCTAGTTTAAATTCATCTT
CTGTATTCCAGCCAAATCCTGACAATCATAGTGTAAATGATGAGAAATGCATTTTGGATGAACAGGAAAC
TGTACTTTCTAATGAGATTTCCACACTTAGTACTAGTTGTAGTCATTTTCAACACATCAGTTCAAACAAT
AACAAAGACACTCATAAAATATTTGGAAAAGAACTTAATGGTAACCAGTTAATGGAAAAAAGAGAAACTG
AAGGCAAAGACAGCAAAAGGAACTACTACTCTAGAGGTCACCGTTCTATTCCAGGTGTTGCTATAGATGG
AGAGAACAACATGAGGCAGTCACCCCAAACAGTTTTCTCCTTGCCAGCTAACTGCGATTGGAAACCGCGG
TGGCTTAGAGCTACATGGGGTTCCTCTACAGAACATGAAAACCGGGGGTCACCTCCTAAAGGTAACCTCA
AGGGCCAGTTCAGAAAGGGCACAGTCAGAACCCTTCCTCCTTCACAAGGAGATTCTCAATCACTTGACAT
TCCAAACACTGCTGATTCTTTGGGAGGGCTGTCCTTTGAGCCAGGGTTGGTCAGAACCTGTAATAATCCT
GTTTGTCCTCCAAATCACGTAGTGTCCCTAACGAACAATCTCATTGGTAGGCGGGTTCCCACAGATCTTC
AGATCTAA

Translation (515 aa):
MGDWNLLGDTLEEVHIHSTMIGKIWLTILFIFRMLVLGVAAEDVWNDEQSGFICNTEQPGCRNVCYDQAF
PISLIRYWVLQVIFVSSPSLVYMGHALYRLRVLEEERQRMKAQLRVELEEVEFEMPRDRRRLEQELCQLE
KRKLNKAPLRGTLLCTYVIHIFTRSVVEVGFMIGQYLLYGFHLEPLFKCHGHPCPNIIDCFVSRPTEKTI
FLLFMQSIATISLFLNILEIFHLGFKKIKRGLWGKYKLKKEHNEFHANKAKQNVAKYQSTSANSLKRLPS
APDYNLLVEKQTHTAVYPSLNSSSVFQPNPDNHSVNDEKCILDEQETVLSNEISTLSTSCSHFQHISSNN
NKDTHKIFGKELNGNQLMEKRETEGKDSKRNYYSRGHRSIPGVAIDGENNMRQSPQTVFSLPANCDWKPR
WLRATWGSSTEHENRGSPPKGNLKGQFRKGTVRTLPPSQGDSQSLDIPNTADSLGGLSFEPGLVRTCNNP
VCPPNHVVSLTNNLIGRRVPTDLQI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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