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Report for CCDS606.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
606.1 Public Homo sapiens 1 C8A 24 110 108 CCDS HistoryNCBI Gene:731Re-query CCDS DB by CCDS ID:606.1Re-query CCDS DB by GeneID:731See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 606.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361249.4 ENSP00000354458.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361249.4Link to Ensembl Protein Viewer:ENSP00000354458.3Re-query CCDS DB by Nucleotide ID:ENST00000361249Re-query CCDS DB by Protein ID:ENSP00000354458
Original member Current member NCBI NM_000562.3 NP_000553.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000562.3Link to Protein Sequence:NP_000553.1Re-query CCDS DB by Nucleotide ID:NM_000562Re-query CCDS DB by Protein ID:NP_000553Link to BLAST:NP_000553.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000553.1 584 P07357 584 100% 0 0

Chromosomal Locations for CCDS 606.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 56854902 56854978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56867609 56867702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56874949 56875093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56876062 56876209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56881445 56881634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56883481 56883681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56885927 56886167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56906667 56906792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56907956 56908113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56912403 56912625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56917565 56917716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGTTTGCTGTTGTTTTCTTCATCTTGTCTTTGATGACTTGTCAGCCTGGGGTAACTGCACAGGAGAAGG
TGAACCAGAGAGTAAGACGGGCAGCTACACCCGCAGCAGTTACCTGCCAGCTGAGCAACTGGTCAGAGTG
GACAGATTGCTTTCCGTGCCAGGACAAAAAGTACCGACACCGGAGCCTCTTGCAGCCAAACAAGTTTGGG
GGAACCATCTGCAGTGGTGACATCTGGGATCAAGCCAGCTGCTCCAGTTCTACAACTTGTGTAAGGCAAG
CACAGTGTGGACAGGATTTCCAGTGTAAGGAGACAGGTCGCTGCCTGAAACGCCACCTTGTGTGTAATGG
AGACCAGGACTGCCTTGATGGCTCTGATGAGGACGACTGTGAAGATGTCAGGGCCATTGACGAAGACTGC
AGCCAGTATGAACCAATTCCAGGATCACAGAAGGCAGCCTTGGGGTACAATATCCTGACCCAGGAAGATG
CTCAGAGTGTGTACGATGCCAGTTATTATGGGGGCCAGTGTGAGACGGTATACAATGGGGAATGGAGGGA
GCTTCGATATGACTCCACCTGTGAACGTCTCTACTATGGAGATGATGAGAAATACTTTCGGAAACCCTAC
AACTTTCTGAAGTACCACTTTGAAGCCCTGGCAGATACTGGAATCTCCTCAGAGTTTTATGATAATGCAA
ATGACCTTCTTTCCAAAGTTAAAAAAGACAAGTCTGACTCATTTGGAGTGACCATCGGCATAGGCCCAGC
CGGCAGCCCTTTATTGGTGGGTGTAGGTGTATCCCACTCACAAGACACTTCATTCTTGAACGAATTAAAC
AAGTATAATGAGAAGAAATTCATTTTCACAAGAATCTTCACAAAGGTGCAGACTGCACATTTTAAGATGA
GGAAGGATGACATTATGCTGGATGAAGGAATGCTGCAGTCATTAATGGAGCTTCCAGATCAGTACAATTA
TGGCATGTATGCCAAGTTCATCAATGACTATGGCACCCATTACATCACATCTGGATCCATGGGTGGCATT
TATGAATATATCCTGGTGATTGACAAAGCAAAAATGGAATCCCTTGGTATTACCAGCAGAGATATCACGA
CATGTTTTGGAGGCTCCTTGGGCATTCAATATGAAGACAAAATAAATGTTGGTGGAGGTTTATCAGGAGA
CCATTGTAAAAAATTTGGAGGTGGCAAAACTGAAAGGGCCAGGAAGGCCATGGCTGTGGAAGACATTATT
TCTCGGGTGCGAGGTGGCAGTTCTGGCTGGAGCGGTGGCTTGGCACAGAACAGGAGCACCATTACATACC
GTTCCTGGGGGAGGTCATTAAAGTATAATCCTGTTGTTATCGATTTTGAGATGCAGCCTATCCACGAGGT
GCTGCGGCACACAAGCCTGGGGCCTCTGGAGGCCAAGCGCCAGAACCTGCGCCGCGCCTTGGACCAGTAT
CTGATGGAATTCAATGCCTGCCGATGTGGGCCTTGCTTCAACAATGGGGTGCCCATCCTCGAGGGCACCA
GCTGCAGGTGCCAGTGCCGCCTGGGTAGCTTGGGTGCTGCCTGTGAGCAAACACAGACAGAAGGAGCCAA
AGCAGATGGGAGCTGGAGTTGCTGGAGCTCCTGGTCTGTATGCAGAGCAGGCATCCAGGAAAGGAGAAGA
GAGTGTGACAATCCAGCACCTCAGAATGGAGGGGCCTCGTGTCCAGGGCGGAAAGTACAGACGCAGGCTT
GCTGA

Translation (584 aa):
MFAVVFFILSLMTCQPGVTAQEKVNQRVRRAATPAAVTCQLSNWSEWTDCFPCQDKKYRHRSLLQPNKFG
GTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDC
SQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDEKYFRKPY
NFLKYHFEALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVSHSQDTSFLNELN
KYNEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGI
YEYILVIDKAKMESLGITSRDITTCFGGSLGIQYEDKINVGGGLSGDHCKKFGGGKTERARKAMAVEDII
SRVRGGSSGWSGGLAQNRSTITYRSWGRSLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQY
LMEFNACRCGPCFNNGVPILEGTSCRCQCRLGSLGAACEQTQTEGAKADGSWSCWSSWSVCRAGIQERRR
ECDNPAPQNGGASCPGRKVQTQAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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