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Report for CCDS41474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41474.1 Public Homo sapiens 1 SIPA1L2 24 110 108 CCDS HistoryNCBI Gene:57568Re-query CCDS DB by CCDS ID:41474.1Re-query CCDS DB by GeneID:57568See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41474.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366630.5 ENSP00000355589.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366630.5Link to Ensembl Protein Viewer:ENSP00000355589.1Re-query CCDS DB by Nucleotide ID:ENST00000366630Re-query CCDS DB by Protein ID:ENSP00000355589
Original member Current member EBI ENST00000674635.1 ENSP00000502693.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674635.1Link to Ensembl Protein Viewer:ENSP00000502693.1Re-query CCDS DB by Nucleotide ID:ENST00000674635Re-query CCDS DB by Protein ID:ENSP00000502693
Original member Current member NCBI NM_020808.5 NP_065859.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020808.5Link to Protein Sequence:NP_065859.3Re-query CCDS DB by Nucleotide ID:NM_020808Re-query CCDS DB by Protein ID:NP_065859Link to BLAST:NP_065859.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065859.3 1722 Q9P2F8-1 1722 100% 0 0

Chromosomal Locations for CCDS 41474.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 232399127 232399273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232402392 232402473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232403448 232403571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232404125 232404178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232415494 232415625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232425589 232425808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232428411 232428564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232432247 232432471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232439108 232439496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232441291 232441394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232441768 232441868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232443602 232443685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232445529 232445786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232460887 232461161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232464840 232465416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232471371 232471528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232479627 232479730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232483792 232483966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232490874 232491062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232493527 232493660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 232513857 232515339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5169 nt):
ATGAGTGACCCAAGGCAGTCACAAGAAGAGAAGCACAAGCTAGGCAGAGCCTCTTCAAAGTTCAAGGATC
CCCCTAGAATCATGCAGTCAGATGATTATTTTGCTCGGAAATTTAAAGCCATTAATGGCAACATGGGACC
CACTACTTCTTTAAATGCCTCGAATTCCAATGAGACTGGCGGTGGTGGTCCGGCTAATGGTACCCCAGCT
GTGCCCAAGATGGGTGTGAGAGCAAGGGTGTCTGAATGGCCTCCTAAAAAGGACTGTTCCAAGGAGCTAA
CATGCAAGGCACTGTGGGAAAGCCGGTCTCAGACCAGTTATGAAAGCATCACTTCTGTCCTGCAGAATGG
GCAGAGTGACCAGAGTGAAGGTCAGCAAGATGAACAGCTCGATCTGGACTTCGTGGAGGCCAAGTACACA
ATCGGAGACATCTTTGTCCATTCCCCCCAAAGAGGACTTCACCCCATAAGACAGAGGAGCAATAGTGATG
TCACTATCAGTGACATTGATGCCGAAGATGTCTTAGACCAAAATGCAGTCAACCCCAACACCGGGGCTGC
CCTGCACAGGGAGTATGGAAGTACTTCATCCATCGACAGGCAAGGCTTATCTGGTGAAAACTTTTTTGCT
ATGCTCAGAGGGTACCGAGTAGAAAATTATGACCACAAAGCAATGGTCCCTTTTGGGTTCCCTGAATTTT
TCCGCTGTGACCCTGCAATCTCTCCGAGCCTTCATGCAGCAGCACAGATTTCTAGGGGAGAATTTGTCCG
CATCTCAGGATTAGATTATGTGGACAGTGCCCTCCTGATGGGGAGAGACAGGGACAAGCCTTTCAAACGG
AGGTTGAAATCAGAGTCGGTGGAAACATCTCTCTTCCGAAAGCTTCGAACTGTTAAAAGTGAGCACGAAA
CTTTCAAGTTCACGTCTGAGCTGGAGGAGAGCCGACTGGAGAGGGGCATTCGCCCTTGGAATTGTCAGCG
ATGTTTTGCACATTATGATGTCCAGAGCATTTTGTTTAATATCAACGAAGCCATGGCTACGAGGGCTAAT
GTGGGGAAAAGGAAAAACATAACCACTGGGGCATCTGCAGCATCCCAGACTCAGATGCCTACGGGCCAGA
CAGGCAACTGTGAGTCCCCTTTAGGGAGCAAGGAGGACCTCAACTCCAAAGAGAACCTGGATGCCGATGA
GGGTGATGGGAAAAGTAACGACCTCGTCCTTAGTTGTCCTTACTTTAGAAATGAGACTGGAGGGGAAGGC
GACAGGCGGATTGCGCTCTCTCGAGCCAACTCATCCTCTTTCAGTTCTGGGGAAAGCTGCTCTTTCGAAT
CGTCACTCAGCTCTCACTGCACAAATGCAGGTGTCTCCGTCTTGGAAGTGCCCAGAGAAAACCAGCCTAT
TCACAGGGAGAAAGTGAAGCGCTACATCATAGAACACATTGACCTTGGGGCCTATTATTACCGCAAATTC
TTCTATGGGAAAGAGCACCAAAACTACTTTGGAATAGATGAAAACCTTGGTCCAGTAGCAGTCAGCATCC
GGAGAGAGAAGGTGGAAGATGCCAAGGAGAAAGAAGGATCCCAGTTCAACTACAGGGTGGCTTTCAGGAC
AAGTGAGCTTACAACACTGAGAGGAGCAATTTTAGAAGATGCTATACCCTCTACTGCTAGGCATGGTACC
GCACGAGGACTACCTCTCAAAGAAGTTTTGGAATACGTCATTCCAGAGCTGAGCATTCAGTGTTTGCGAC
AGGCTTCCAACTCACCCAAGGTCTCAGAGCAGCTGCTCAAGCTTGATGAACAAGGGCTGAGCTTTCAGCA
CAAGATCGGGATCCTTTATTGCAAAGCAGGCCAGAGCACAGAGGAAGAGATGTATAACAATGAGACGGCG
GGACCAGCTTTTGAAGAATTCCTTGATCTTCTGGGCCAGAGAGTCCGACTGAAAGGATTTAGTAAATATC
GAGCTCAGCTAGACAATAAGACTGATTCCACGGGCACGCACTCTCTCTATACCACATACAAAGACTACGA
ACTCATGTTCCACGTGTCAACCCTGCTTCCCTACATGCCCAACAACAGACAACAGCTACTGAGGAAAAGG
CACATAGGAAATGACATCGTCACCATCGTCTTCCAGGAGCCTGGGGCACTTCCTTTTACTCCAAAAAGCA
TCCGGTCTCACTTTCAGCATGTCTTTGTCATAGTCAAAGTGCATAATCCATGTACCGAAAATGTGTGTTA
TAGTGTTGGAGTTTCCAGATCAAAAGATGTGCCACCATTTGGCCCACCGATTCCCAAAGGTGTAACTTTT
CCAAAGTCAGCCGTGTTCCGGGACTTCCTTTTAGCCAAAGTAATCAATGCAGAAAATGCAGCCCATAAAT
CAGAAAAGTTTCGAGCAATGGCCACTCGAACGAGGCAGGAGTACTTGAAAGATCTGGCGGAGAACTTTGT
CACAACCGCCACCGTGGATACCTCTGTGAAGTTCAGCTTCATTACGCTGGGTGCGAAGAAAAAGGAGAAG
GTAAAGCCAAGGAAGGATGCCCACTTGTTTAGCATTGGGGCCATCATGTGGCACGTGATAGCCCGGGACT
TCGGCCAGTCTGCTGACATTGAATGTCTTCTCGGGATCTCCAATGAGTTCATCATGTTGATTGAAAAGGA
TTCCAAGAATGTTGTATTCAACTGTTCCTGCAGGGATGTGATTGGGTGGACATCTGGATTAGTGAGTATC
AAAGTGTTTTACGAAAGAGGAGAATGTGTCCTCCTGTCCTCGGTAGACAACTGTGCTGAAGACATCAGGG
AAATTGTTCAGCGATTAGTAATAGTGACGAGAGGCTGCGAGACTGTGGAAATGACCCTGAGGAGGAACGG
GCTGGGCCAGCTTGGCTTCCATGTGAATTTTGAAGGAATTGTCGCAGATGTGGAACCTTTTGGCTTTGCC
TGGAAGGCTGGCCTTCGCCAAGGGAGCCGCCTCGTGGAGATCTGCAAAGTAGCCGTGGCCACTCTGACCC
ACGAGCAGATGATCGACCTGCTCCGTACTTCTGTGACTGTGAAGGTGGTCATCATCCAGCCCCATGATGA
CGGCTCGCCCCGAAGAGGGTGTTCAGAGCTCTGCCGGATCCCTATGGTGGAATATAAACTCGACAGCGAG
GGCACCCCCTGCGAGTATAAAACCCCCTTCAGGAGGAACACCACGTGGCACCGGGTGCCCACTCCTGCCC
TGCAGCCCCTCTCTAGAGCTTCCCCCATCCCCGGCACGCCCGACCGGCTGCCGTGCCAACAGCTGCTCCA
GCAGGCCCAGGCTGCCATTCCTCGAAGCACCTCCTTCGACCGGAAGCTGCCCGATGGCACGAGAAGCTCA
CCCAGCAACCAGTCATCCTCCAGCGACCCTGGACCCGGCGGGAGCGGACCCTGGAGACCACAAGTGGGCT
ACGACGGGTGCCAGTCCCCTCTACTGCTCGAACACCAGGGCTCAGGCCCTTTGGAATGTGACGGAGCCAG
GGAGAGGGAAGACACCATGGAAGCAAGCAGGCACCCGGAAACCAAATGGCATGGCCCACCTTCCAAAGTC
CTGGGTTCCTATAAAGAAAGAGCTCTGCAGAAAGATGGAAGTTGCAAAGATTCCCCCAATAAGCTTTCTC
ACATTGGGGATAAAAGTTGCTCCAGTCACTCCAGCAGCAACACGCTCTCCAGCAACACCTCCAGCAACAG
TGACGACAAGCACTTTGGGTCTGGCGACCTGATGGACCCCGAATTACTGGGGCTGACCTACATCAAAGGG
GCCTCCACCGACAGTGGCATCGACACGGCCCCCTGCATGCCTGCCACCATCCTCGGCCCTGTGCACCTGG
CAGGCAGCAGGTCCCTGATCCACAGCCGGGCCGAGCAGTGGGCTGATGCTGCCGACGTCTCTGGGCCTGA
CGACGAGCCAGCCAAGTTATATTCTGTGCATGGCTACGCGTCCACCATCTCCGCCGGCAGTGCTGCGGAA
GGCAGCATGGGCGATCTCAGTGAGATATCCTCTCATTCCAGTGGTTCTCACCATTCAGGAAGCCCTTCAG
CTCACTGTTCAAAAAGTAGTGGGTCTCTGGATTCATCCAAAGTCTACATCGTGTCTCACAGCAGCGGACA
ACAGGTTCCCGGGTCCATGTCCAAGCCCTACCACAGACAAGGGGCAGTGAACAAATATGTCATCGGCTGG
AAGAAATCGGAGGGCAGCCCACCGCCCGAGGAGCCTGAAGTGACTGAATGTCCCGGGATGTATAGTGAGA
TGGATGTCATGTCCACAGCAACTCAGCATCAGACAGTGGTGGGAGATGCTGTTGCAGAGACTCAACATGT
TCTGTCTAAAGAAGATTTTCTGAAATTGATGCTTCCTGACAGCCCCTTAGTGGAGGAGGGGCGAAGAAAG
TTTTCGTTCTATGGGAACCTGTCTCCAAGGAGGTCGCTTTACCGCACGCTGTCTGACGAGAGCATCTGCA
GCAACAGGAGGGGGTCCTCCTTTGGCAGTTCCCGGAGTTCCGTGCTTGACCAGGCCCTGCCCAACGACAT
TCTGTTCAGCACCACCCCACCCTACCACAGCACGCTGCCTCCGCGGGCCCACCCCGCACCCAGCATGGGG
AGCCTGAGAAATGAGTTCTGGTTCTCCGATGGGTCCTTATCAGATAAGTCCAAGTGCGCAGATCCTGGCC
TGATGCCCCTCCCGGACACAGCCACAGGGTTAGATTGGACCCACCTCGTGGATGCTGCACGGGCATTTGA
AGGTCTTGACTCAGATGAAGAACTGGGGCTGCTCTGTCACCACACGTCCTATCTAGACCAGAGGGTGGCA
TCCTTCTGCACCCTGACAGATATGCAGCATGGGCAGGACCTGGAAGGGGCCCAAGAGCTGCCCTTATGTG
TAGATCCAGGCAGTGGCAAAGAGTTCATGGACACAACTGGGGAGCGTTCTCCATCACCACTGACCGGGAA
AGTCAATCAGCTGGAATTAATTCTTCGACAACTCCAGACCGACCTTCGGAAGGAAAAACAAGACAAGGCC
GTTCTCCAAGCAGAAGTGCAGCACCTGAGACAGGACAACATGAGACTGCAGGAGGAGTCCCAGACCGCGA
CAGCTCAGCTGCGGAAATTCACAGAATGGTTTTTCACCACCATCGACAAAAAATCTTAG

Translation (1722 aa):
MSDPRQSQEEKHKLGRASSKFKDPPRIMQSDDYFARKFKAINGNMGPTTSLNASNSNETGGGGPANGTPA
VPKMGVRARVSEWPPKKDCSKELTCKALWESRSQTSYESITSVLQNGQSDQSEGQQDEQLDLDFVEAKYT
IGDIFVHSPQRGLHPIRQRSNSDVTISDIDAEDVLDQNAVNPNTGAALHREYGSTSSIDRQGLSGENFFA
MLRGYRVENYDHKAMVPFGFPEFFRCDPAISPSLHAAAQISRGEFVRISGLDYVDSALLMGRDRDKPFKR
RLKSESVETSLFRKLRTVKSEHETFKFTSELEESRLERGIRPWNCQRCFAHYDVQSILFNINEAMATRAN
VGKRKNITTGASAASQTQMPTGQTGNCESPLGSKEDLNSKENLDADEGDGKSNDLVLSCPYFRNETGGEG
DRRIALSRANSSSFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYIIEHIDLGAYYYRKF
FYGKEHQNYFGIDENLGPVAVSIRREKVEDAKEKEGSQFNYRVAFRTSELTTLRGAILEDAIPSTARHGT
ARGLPLKEVLEYVIPELSIQCLRQASNSPKVSEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETA
GPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDYELMFHVSTLLPYMPNNRQQLLRKR
HIGNDIVTIVFQEPGALPFTPKSIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTF
PKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSVKFSFITLGAKKKEK
VKPRKDAHLFSIGAIMWHVIARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVSI
KVFYERGECVLLSSVDNCAEDIREIVQRLVIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFA
WKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIQPHDDGSPRRGCSELCRIPMVEYKLDSE
GTPCEYKTPFRRNTTWHRVPTPALQPLSRASPIPGTPDRLPCQQLLQQAQAAIPRSTSFDRKLPDGTRSS
PSNQSSSSDPGPGGSGPWRPQVGYDGCQSPLLLEHQGSGPLECDGAREREDTMEASRHPETKWHGPPSKV
LGSYKERALQKDGSCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKG
ASTDSGIDTAPCMPATILGPVHLAGSRSLIHSRAEQWADAADVSGPDDEPAKLYSVHGYASTISAGSAAE
GSMGDLSEISSHSSGSHHSGSPSAHCSKSSGSLDSSKVYIVSHSSGQQVPGSMSKPYHRQGAVNKYVIGW
KKSEGSPPPEEPEVTECPGMYSEMDVMSTATQHQTVVGDAVAETQHVLSKEDFLKLMLPDSPLVEEGRRK
FSFYGNLSPRRSLYRTLSDESICSNRRGSSFGSSRSSVLDQALPNDILFSTTPPYHSTLPPRAHPAPSMG
SLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWTHLVDAARAFEGLDSDEELGLLCHHTSYLDQRVA
SFCTLTDMQHGQDLEGAQELPLCVDPGSGKEFMDTTGERSPSPLTGKVNQLELILRQLQTDLRKEKQDKA
VLQAEVQHLRQDNMRLQEESQTATAQLRKFTEWFFTTIDKKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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