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Report for CCDS64506.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
64506.1 Public Homo sapiens 6 CALHM6 24 110 108 CCDS HistoryNCBI Gene:441168Re-query CCDS DB by CCDS ID:64506.1Re-query CCDS DB by GeneID:441168See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 64506.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368606.7 ENSP00000357595.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368606.7Link to Ensembl Protein Viewer:ENSP00000357595.3Re-query CCDS DB by Nucleotide ID:ENST00000368606Re-query CCDS DB by Protein ID:ENSP00000357595
Original member Current member NCBI NM_001276460.2 NP_001263389.1 Accepted alive Link to Nucleotide Sequence:NM_001276460.2Link to Protein Sequence:NP_001263389.1Re-query CCDS DB by Nucleotide ID:NM_001276460Re-query CCDS DB by Protein ID:NP_001263389Link to BLAST:NP_001263389.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263389.1 143 Q5R3K3-2 143 100% 0 0

Chromosomal Locations for CCDS 64506.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116461421 116461429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116463283 116463705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGTTTCCCGTGTTGGGCTGGATCTTGATAGCAGTTGTTATCATCATTCTTCTGATTTTTACATCTGTCA
CCCGATGCCTATCTCCAGTTAGTTTTCTGCAGCTGAAATTCTGGAAAATCTATTTGGAACAGGAGCAGCA
GATCCTTAAAAGTAAAGCCACAGAGCATGCAACTGAATTGGCAAAAGAGAATATTAAATGTTTCTTTGAG
GGCTCGCATCCAAAAGAATATAACACTCCAAGCATGAAAGAGTGGCAGCAAATTTCATCACTGTATACTT
TCAATCCGAAGGGCCAGTACTACAGCATGTTGCACAAATATGTCAACAGAAAAGAGAAGACTCACAGTAT
CAGGTCTACTGAAGGAGATACGGTGATTCCTGTTCTTGGCTTTGTAGATTCATCTGGTATAAACAGCACT
CCTGAGTTATGA

Translation (143 aa):
MFPVLGWILIAVVIIILLIFTSVTRCLSPVSFLQLKFWKIYLEQEQQILKSKATEHATELAKENIKCFFE
GSHPKEYNTPSMKEWQQISSLYTFNPKGQYYSMLHKYVNRKEKTHSIRSTEGDTVIPVLGFVDSSGINST
PEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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