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Report for CCDS14573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14573.1 Public Homo sapiens X IL13RA1 24 110 108 CCDS HistoryNCBI Gene:3597Re-query CCDS DB by CCDS ID:14573.1Re-query CCDS DB by GeneID:3597See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14573.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371666.8 ENSP00000360730.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371666.8Link to Ensembl Protein Viewer:ENSP00000360730.3Re-query CCDS DB by Nucleotide ID:ENST00000371666Re-query CCDS DB by Protein ID:ENSP00000360730
Original member Current member NCBI NM_001560.3 NP_001551.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001560.3Link to Protein Sequence:NP_001551.1Re-query CCDS DB by Nucleotide ID:NM_001560Re-query CCDS DB by Protein ID:NP_001551Link to BLAST:NP_001551.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001551.1 427 P78552-1 427 100% 0 0

Chromosomal Locations for CCDS 14573.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 118727639 118727726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118741017 118741156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118746954 118747092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118749658 118749778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118758055 118758242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118761138 118761289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118766530 118766577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118766844 118766976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118773879 118773975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118776427 118776511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118791762 118791854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGGAGTGGCCGGCGCGGCTCTGCGGGCTGTGGGCGCTGCTGCTCTGCGCCGGCGGCGGGGGCGGGGGCG
GGGGCGCCGCGCCTACGGAAACTCAGCCACCTGTGACAAATTTGAGTGTCTCTGTTGAAAACCTCTGCAC
AGTAATATGGACATGGAATCCACCCGAGGGAGCCAGCTCAAATTGTAGTCTATGGTATTTTAGTCATTTT
GGCGACAAACAAGATAAGAAAATAGCTCCGGAAACTCGTCGTTCAATAGAAGTACCCCTGAATGAGAGGA
TTTGTCTGCAAGTGGGGTCCCAGTGTAGCACCAATGAGAGTGAGAAGCCTAGCATTTTGGTTGAAAAATG
CATCTCACCCCCAGAAGGTGATCCTGAGTCTGCTGTGACTGAGCTTCAATGCATTTGGCACAACCTGAGC
TACATGAAGTGTTCTTGGCTCCCTGGAAGGAATACCAGTCCCGACACTAACTATACTCTCTACTATTGGC
ACAGAAGCCTGGAAAAAATTCATCAATGTGAAAACATCTTTAGAGAAGGCCAATACTTTGGTTGTTCCTT
TGATCTGACCAAAGTGAAGGATTCCAGTTTTGAACAACACAGTGTCCAAATAATGGTCAAGGATAATGCA
GGAAAAATTAAACCATCCTTCAATATAGTGCCTTTAACTTCCCGTGTGAAACCTGATCCTCCACATATTA
AAAACCTCTCCTTCCACAATGATGACCTATATGTGCAATGGGAGAATCCACAGAATTTTATTAGCAGATG
CCTATTTTATGAAGTAGAAGTCAATAACAGCCAAACTGAGACACATAATGTTTTCTACGTCCAAGAGGCT
AAATGTGAGAATCCAGAATTTGAGAGAAATGTGGAGAATACATCTTGTTTCATGGTCCCTGGTGTTCTTC
CTGATACTTTGAACACAGTCAGAATAAGAGTCAAAACAAATAAGTTATGCTATGAGGATGACAAACTCTG
GAGTAATTGGAGCCAAGAAATGAGTATAGGTAAGAAGCGCAATTCCACACTCTACATAACCATGTTACTC
ATTGTTCCAGTCATCGTCGCAGGTGCAATCATAGTACTCCTGCTTTACCTAAAAAGGCTCAAGATTATTA
TATTCCCTCCAATTCCTGATCCTGGCAAGATTTTTAAAGAAATGTTTGGAGACCAGAATGATGATACTCT
GCACTGGAAGAAGTACGACATCTATGAGAAGCAAACCAAGGAGGAAACCGACTCTGTAGTGCTGATAGAA
AACCTGAAGAAAGCCTCTCAGTGA

Translation (427 aa):
MEWPARLCGLWALLLCAGGGGGGGGAAPTETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHF
GDKQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLS
YMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNA
GKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQEA
KCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKKRNSTLYITMLL
IVPVIVAGAIIVLLLYLKRLKIIIFPPIPDPGKIFKEMFGDQNDDTLHWKKYDIYEKQTKEETDSVVLIE
NLKKASQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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