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Report for CCDS7411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7411.1 Public Homo sapiens 10 RPP30 24 110 108 CCDS HistoryNCBI Gene:10556Re-query CCDS DB by CCDS ID:7411.1Re-query CCDS DB by GeneID:10556See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371703.8 ENSP00000360768.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371703.8Link to Ensembl Protein Viewer:ENSP00000360768.3Re-query CCDS DB by Nucleotide ID:ENST00000371703Re-query CCDS DB by Protein ID:ENSP00000360768
Original member Current member NCBI NM_006413.5 NP_006404.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006413.5Link to Protein Sequence:NP_006404.1Re-query CCDS DB by Nucleotide ID:NM_006413Re-query CCDS DB by Protein ID:NP_006404Link to BLAST:NP_006404.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006404.1 268 P78346-1 268 100% 0 0

Chromosomal Locations for CCDS 7411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 90871987 90872068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90874869 90874924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90875558 90875614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90876024 90876098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90879063 90879134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90885812 90885901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90894775 90894891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90895454 90895483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90895880 90895917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90896313 90896392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 90900570 90900679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGCGGTGTTTGCAGATTTGGACCTGCGAGCGGGTTCTGACCTGAAGGCTCTGCGCGGACTTGTGGAGA
CAGCCGCTCACCTTGGCTATTCAGTTGTTGCTATCAATCATATCGTTGACTTTAAGGAAAAGAAACAGGA
AATTGAAAAACCAGTAGCTGTTTCTGAACTCTTCACAACTTTGCCAATTGTACAGGGAAAATCAAGACCA
ATTAAAATTTTAACTAGATTAACAATTATTGTCTCGGATCCATCTCACTGCAATGTTTTGAGAGCAACTT
CTTCAAGGGCCCGGCTCTATGATGTTGTTGCAGTTTTTCCAAAGACAGAAAAGCTTTTTCATATTGCTTG
CACACATTTAGATGTGGATTTAGTCTGCATAACTGTAACAGAGAAACTACCATTTTACTTCAAAAGACCT
CCTATTAATGTGGCGATTGACCGAGGCCTGGCTTTTGAACTTGTCTATAGCCCTGCTATCAAAGACTCCA
CAATGAGAAGGTATACAATTTCCAGTGCCCTCAATTTGATGCAAATCTGCAAAGGAAAGAATGTAATTAT
ATCTAGTGCTGCAGAAAGGCCTTTAGAAATAAGAGGGCCATATGACGTGGCAAATCTAGGCTTGCTGTTT
GGGCTCTCTGAAAGTGACGCCAAGGCTGCGGTGTCCACCAACTGCCGAGCAGCGCTTCTCCATGGAGAAA
CTAGAAAAACTGCTTTTGGAATTATCTCTACAGTGAAGAAACCTCGGCCATCAGAAGGAGATGAAGATTG
TCTTCCAGCTTCCAAGAAAGCCAAGTGTGAGGGCTGA

Translation (268 aa):
MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTTLPIVQGKSRP
IKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHLDVDLVCITVTEKLPFYFKRP
PINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPYDVANLGLLF
GLSESDAKAAVSTNCRAALLHGETRKTAFGIISTVKKPRPSEGDEDCLPASKKAKCEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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