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Report for CCDS14565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14565.1 Public Homo sapiens X IL13RA2 24 110 108 CCDS HistoryNCBI Gene:3598Re-query CCDS DB by CCDS ID:14565.1Re-query CCDS DB by GeneID:3598See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000243213.2 ENSP00000243213.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000243213.2Link to Ensembl Protein Viewer:ENSP00000243213.1Re-query CCDS DB by Nucleotide ID:ENST00000243213Re-query CCDS DB by Protein ID:ENSP00000243213
Original member Current member EBI ENST00000371936.5 ENSP00000361004.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371936.5Link to Ensembl Protein Viewer:ENSP00000361004.1Re-query CCDS DB by Nucleotide ID:ENST00000371936Re-query CCDS DB by Protein ID:ENSP00000361004
Original member Current member NCBI NM_000640.3 NP_000631.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000640.3Link to Protein Sequence:NP_000631.1Re-query CCDS DB by Nucleotide ID:NM_000640Re-query CCDS DB by Protein ID:NP_000631Link to BLAST:NP_000631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000631.1 380 Q14627 380 100% 0 0

Chromosomal Locations for CCDS 14565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 115004080 115004106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115005197 115005315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115007932 115008076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115009521 115009666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115010644 115010828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115013769 115013889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115014421 115014574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115015670 115015821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 115017176 115017269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGCTTTCGTTTGCTTGGCTATCGGATGCTTATATACCTTTCTGATAAGCACAACATTTGGCTGTACTT
CATCTTCAGACACCGAGATAAAAGTTAACCCTCCTCAGGATTTTGAGATAGTGGATCCCGGATACTTAGG
TTATCTCTATTTGCAATGGCAACCCCCACTGTCTCTGGATCATTTTAAGGAATGCACAGTGGAATATGAA
CTAAAATACCGAAACATTGGTAGTGAAACATGGAAGACCATCATTACTAAGAATCTACATTACAAAGATG
GGTTTGATCTTAACAAGGGCATTGAAGCGAAGATACACACGCTTTTACCATGGCAATGCACAAATGGATC
AGAAGTTCAAAGTTCCTGGGCAGAAACTACTTATTGGATATCACCACAAGGAATTCCAGAAACTAAAGTT
CAGGATATGGATTGCGTATATTACAATTGGCAATATTTACTCTGTTCTTGGAAACCTGGCATAGGTGTAC
TTCTTGATACCAATTACAACTTGTTTTACTGGTATGAGGGCTTGGATCATGCATTACAGTGTGTTGATTA
CATCAAGGCTGATGGACAAAATATAGGATGCAGATTTCCCTATTTGGAGGCATCAGACTATAAAGATTTC
TATATTTGTGTTAATGGATCATCAGAGAACAAGCCTATCAGATCCAGTTATTTCACTTTTCAGCTTCAAA
ATATAGTTAAACCTTTGCCGCCAGTCTATCTTACTTTTACTCGGGAGAGTTCATGTGAAATTAAGCTGAA
ATGGAGCATACCTTTGGGACCTATTCCAGCAAGGTGTTTTGATTATGAAATTGAGATCAGAGAAGATGAT
ACTACCTTGGTGACTGCTACAGTTGAAAATGAAACATACACCTTGAAAACAACAAATGAAACCCGACAAT
TATGCTTTGTAGTAAGAAGCAAAGTGAATATTTATTGCTCAGATGACGGAATTTGGAGTGAGTGGAGTGA
TAAACAATGCTGGGAAGGTGAAGACCTATCGAAGAAAACTTTGCTACGTTTCTGGCTACCATTTGGTTTC
ATCTTAATATTAGTTATATTTGTAACCGGTCTGCTTTTGCGTAAGCCAAACACCTACCCAAAAATGATTC
CAGAATTTTTCTGTGATACATGA

Translation (380 aa):
MAFVCLAIGCLYTFLISTTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYE
LKYRNIGSETWKTIITKNLHYKDGFDLNKGIEAKIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETKV
QDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDF
YICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDD
TTLVTATVENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDLSKKTLLRFWLPFGF
ILILVIFVTGLLLRKPNTYPKMIPEFFCDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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