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Report for CCDS56579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56579.1 Public Homo sapiens 9 MSANTD3 24 110 108 CCDS HistoryNCBI Gene:91283Re-query CCDS DB by CCDS ID:56579.1Re-query CCDS DB by GeneID:91283See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56579.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374885.5 ENSP00000364020.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374885.5Link to Ensembl Protein Viewer:ENSP00000364020.1Re-query CCDS DB by Nucleotide ID:ENST00000374885Re-query CCDS DB by Protein ID:ENSP00000364020
Original member Current member NCBI NM_001198807.2 NP_001185736.1 Accepted alive Link to Nucleotide Sequence:NM_001198807.2Link to Protein Sequence:NP_001185736.1Re-query CCDS DB by Nucleotide ID:NM_001198807Re-query CCDS DB by Protein ID:NP_001185736Link to BLAST:NP_001185736.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185736.1 159 Q96H12-2 159 100% 0 0

Chromosomal Locations for CCDS 56579.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 100441939 100442356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 100445169 100445230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGCAAAACAACGAAATTATAAAGCCTGCCAAATACTTCTCAGAATTGGAAAAGAGCATCCTGCTGGCTT
TAGTAGAAAAGTATAAATATGTGCTGGAATGTAAGAAAAGTGATGCGCGAACTATTGCCCTTAAGCAGCG
TACCTGGCAGGCGCTGGCCCACGAATACAACTCTCAGCCCAGCGTGTCCCTGCGGGATTTCAAACAGCTG
AAGAAGTGCTGGGAGAACATCAAGGCTCGGACCAAAAAAATTATGGCCCATGAAAGGAGAGAGAAAGTGA
AACGGAGCGTCAGCCCTCTCCTGAGTACCCACGTCCTAGGGAAGGAGAAGATCGCCAGCATGCTGCCGGA
GCAGCTCTACTTCCTGCAGAGCCCCCCGGAGGAGGAGCCCGAATACCACCCCGACGCCTCAGCCCAAGTT
TTCTTTCAAGAAAGAAAAAGAAGCCTGGAATTGTCAATCATCCTTTCTGGGACTTGGTAG

Translation (159 aa):
MQNNEIIKPAKYFSELEKSILLALVEKYKYVLECKKSDARTIALKQRTWQALAHEYNSQPSVSLRDFKQL
KKCWENIKARTKKIMAHERREKVKRSVSPLLSTHVLGKEKIASMLPEQLYFLQSPPEEEPEYHPDASAQV
FFQERKRSLELSIILSGTW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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