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Report for CCDS6648.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6648.1 Public Homo sapiens 9 C9orf40 24 110 108 CCDS HistoryNCBI Gene:55071Re-query CCDS DB by CCDS ID:6648.1Re-query CCDS DB by GeneID:55071See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6648.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376854.6 ENSP00000366050.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376854.6Link to Ensembl Protein Viewer:ENSP00000366050.5Re-query CCDS DB by Nucleotide ID:ENST00000376854Re-query CCDS DB by Protein ID:ENSP00000366050
Original member Current member NCBI NM_017998.3 NP_060468.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017998.3Link to Protein Sequence:NP_060468.2Re-query CCDS DB by Nucleotide ID:NM_017998Re-query CCDS DB by Protein ID:NP_060468Link to BLAST:NP_060468.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060468.2 194 Q8IXQ3 194 100% 0 0

Chromosomal Locations for CCDS 6648.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 74948048 74948206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74952186 74952611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGGCCAAGCGGCGTGCGGCCGAGCCGGTGACGTTCCACGTGCCTTGGAAGCGGCTCCTGCTTTGCGACT
TCGCTGAGCAGCCGCCGCCACCGCCTCTCTGGATCCGGCCGCCCGGGGTCGCGCATGCTGGGCAGCTCCT
CGGCGTCCCAGAGCAGCACCGAAAGCGCAAAATCGACGCAGGGACCATGGCAGAGCCCTCGGCTTCGCCC
AGCAAGCGCCGTGACAGCGGGGACAACAGCGCCCCGAGCGGCCAGGAGCGTGAGGACCACGGTCTGGAGA
CAGGCGATCCGCCGCTGCCGCCGCCGCCCGTACTGCCGGGGCCGGGGGAGGAGCTCCCGGGCGCCCGGCT
CCCGGGGGGCGGTGGCGACGACGGGGCGGGGCGCGCAGGACCCCCGCGGGGAGACTGGGGGGTCGCATCG
CGCCAGCACAATGAAGAATTTTGGCAGTATAATACCTTCCAGTACTGGAGGAATCCTTTGCCTCCTATTG
ATCTGGCAGACATTGAAGATTTAAGTGAAGACACCCTGACAGAAGCAACACTTCAGGGCAGGAATGAAGG
GGCTGAGGTTGACATGGAGTCCTGA

Translation (194 aa):
MAKRRAAEPVTFHVPWKRLLLCDFAEQPPPPPLWIRPPGVAHAGQLLGVPEQHRKRKIDAGTMAEPSASP
SKRRDSGDNSAPSGQEREDHGLETGDPPLPPPPVLPGPGEELPGARLPGGGGDDGAGRAGPPRGDWGVAS
RQHNEEFWQYNTFQYWRNPLPPIDLADIEDLSEDTLTEATLQGRNEGAEVDMES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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