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Report for CCDS43806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43806.1 Public Homo sapiens 9 SHB 24 110 108 CCDS HistoryNCBI Gene:6461Re-query CCDS DB by CCDS ID:43806.1Re-query CCDS DB by GeneID:6461See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43806.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377707.4 ENSP00000366936.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377707.4Link to Ensembl Protein Viewer:ENSP00000366936.3Re-query CCDS DB by Nucleotide ID:ENST00000377707Re-query CCDS DB by Protein ID:ENSP00000366936
Original member Current member NCBI NM_003028.3 NP_003019.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003028.3Link to Protein Sequence:NP_003019.2Re-query CCDS DB by Nucleotide ID:NM_003028Re-query CCDS DB by Protein ID:NP_003019Link to BLAST:NP_003019.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003019.2 509 Q15464-1 509 100% 0 0

Chromosomal Locations for CCDS 43806.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37919821 37920004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37948635 37948754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37955883 37956054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37974622 37974837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38016011 38016131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 38067929 38068645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGGCCAAGTGGCTAAACAAGTACTTCAGCTTGGGCAACAGCAAGACCAAGAGCCCCCCGCAGCCGCCGC
GG
CCAGACTACCGCGAGCAGCGGCGCCGAGGCGAGCGGCCTTCGCAGCCCCCCCAGGCCGTGCCGCAGGC
C
TCCTCCGCCGCCTCGGCGTCCTGCGGTCCGGCCACCGCCTCCTGCTTCTCAGCCTCTTCGGGCTCGCTG
CCC
GACGACAGCGGCAGCACCAGCGACCTCATCCGCGCCTACCGCGCGCAGAAGGAGCGAGACTTCGAGG
AC
CCCTACAACGGGCCTGGCTCGTCGCTGCGCAAACTGCGCGCCATGTGCCGCCTGGACTACTGCGGCGG
C
AGCGGGGAGCCAGGCGGGGTCCAGCGCGCCTTCTCGGCCTCGTCCGCGTCGGGCGCCGCGGGCTGTTGC
TGC
GCCTCCTCGGGCGCGGGGGCCGCCGCGTCCTCGTCCTCGTCCTCCGGCTCTCCGCATCTCTACCGCA
GC
AGCAGCGAGCGGCGGCCCGCCACGCCGGCCGAGGTGCGCTACATCTCCCCCAAGCACCGCCTCATCAA
A
GTGGAGAGCGCCGCGGGCGGTGGGGCCGGGGACCCCCTGGGGGGCGCCTGCGCGGGCGGCCGCACCTGG
AGC
CCGACGGCCTGCGGAGGCAAGAAACTGCTCAACAAGTGCGCCGCCTCAGCCGCGGAGGAGAGCGGGG
CC
GGCAAGAAGGACAAGGTGACCATAGCCGATGACTACTCAGATCCCTTTGATGCCAAGAATGATCTCAA
G
AGCAAAGCAGGAAAGGGGGAGAGTGCTGGCTACATGGAGCCCTATGAGGCACAGAGGATCATGACAGAA
TTT
CAGAGGCAGGAAAGTGTCCGGTCCCAGCATAAAGGTATCCAGTTATATGACACCCCTTACGAACCTG
AA
GGCCAAAGTGTTGACTCAGACTCGGAGAGCACAGTCAGCCCCCGACTGCGGGAGAGCAAGCTGCCCCA
G
GATGACGACAGGCCCGCCGATGAGTACGACCAGCCTTGGGAGTGGAACCGGGTCACCATCCCAGCCCTG
GCA
GCACAGTTTAATGGCAACGAGAAGCGGCAGTCATCCCCCTCACCTTCGCGGGACCGGCGGCGCCAGC
TT
CGTGCCCCTGGAGGGGGCTTTAAGCCTATCAAACATGGGAGCCCTGAGTTCTGCGGGATCCTAGGAGA
A
AGGGTGGATCCTGCCGTCCCCCTGGAGAAGCAAATATGGTATCACGGAGCCATCAGCAGAGGAGACGCC
GAG
AACCTGCTGCGACTCTGCAAGGAGTGTAGCTACCTTGTCCGGAACAGCCAGACCAGCAAGCATGACT
AC
TCCCTCTCCCTGAGGAGCAACCAGGGTTTTATGCACATGAAACTGGCCAAAACCAAAGAGAAATACGT
T
CTGGGTCAGAACAGCCCTCCGTTCGACAGTGTCCCGGAAGTCATCCACTACTACACCACCAGAAAGCTA
CCC
ATCAAAGGGGCTGAGCACTTGTCCCTCCTCTATCCCGTGGCTGTGAGGACCCTGTGA


Translation (509 aa):
MAKWLNKYFSLGNSKTKSPPQPPRPDYREQRRRGERPSQPPQAVPQASSAASASCGPATASCFSASSGSL
P
DDSGSTSDLIRAYRAQKERDFEDPYNGPGSSLRKLRAMCRLDYCGGSGEPGGVQRAFSASSASGAAGCC
C
ASSGAGAAASSSSSSGSPHLYRSSSERRPATPAEVRYISPKHRLIKVESAAGGGAGDPLGGACAGGRTW
S
PTACGGKKLLNKCAASAAEESGAGKKDK
VTIADDYSDPFDAKNDLKSKAGKGESAGYMEPYEAQRIMTE
F
QRQESVRSQHKGIQLYDTPYEPEGQSVDSDSESTVSPRLRESKLPQDDDRPADEYDQPWEWNRVTIPAL
A
AQFNGNEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGERVDPAVPLEKQIWYHGAISRGDA
E
NLLRLCKECSYLVRNSQTSKHDYSLSL
RSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYYTTRKL
P
IKGAEHLSLLYPVAVRTL




Links Key
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