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Report for CCDS7084.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7084.1 Public Homo sapiens 10 ECHDC3 24 110 108 CCDS HistoryNCBI Gene:79746Re-query CCDS DB by CCDS ID:7084.1Re-query CCDS DB by GeneID:79746See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7084.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379215.9 ENSP00000368517.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379215.9Link to Ensembl Protein Viewer:ENSP00000368517.4Re-query CCDS DB by Nucleotide ID:ENST00000379215Re-query CCDS DB by Protein ID:ENSP00000368517
Original member Current member NCBI NM_024693.5 NP_078969.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024693.5Link to Protein Sequence:NP_078969.3Re-query CCDS DB by Nucleotide ID:NM_024693Re-query CCDS DB by Protein ID:NP_078969Link to BLAST:NP_078969.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078969.3 303 Q96DC8-1 303 100% 0 0

Chromosomal Locations for CCDS 7084.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 11742577 11742746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11747349 11747470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11749495 11749592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11755408 11755608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11763224 11763544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGGCCGCCGTCGCCGTCTTGCGGGCCTTCGGGGCAAGTGGGCCCATGTGTCTCCGGCGCGGCCCCTGGG
CCCAGCTCCCCGCCCGCTTCTGCAGCCGGGACCCGGCCGGGGCGGGGCGGCGGGAGTCGGAGCCGCGGCC
CACCAGCGCGCGGCAGCTGGACGGCATAAGGAACATCGTCTTGAGCAATCCCAAGAAGAGGAACGCGTTG
TCACTTGCAATGCTGAAGTCTCTCCAAAGTGACATTCTTCATGACGCTGACAGCAACGATCTGAAAGTCA
TTATCATCTCGGCTGAGGGGCCTGTGTTTTCTTCTGGGCATGACTTAAAGGAGCTGACAGAGGAGCAAGG
CCGTGATTACCATGCCGAAGTATTTCAGACCTGTTCCAAGGTCATGATGCACATCCGGAACCACCCCGTT
CCCGTCATTGCCATGGTCAATGGCCTGGCCGCGGCTGCCGGCTGTCAACTGGTTGCCAGCTGCGACATTG
CCGTGGCGAGCGACAAGTCCTCTTTTGCCACTCCTGGGGTGAACGTCGGGCTCTTCTGTTCTACCCCTGG
GGTTGCCTTGGCAAGAGCAGTGCCTAGAAAGGTGGCCTTGGAGATGCTCTTTACTGGTGAGCCCATTTCT
GCCCAGGAGGCCCTGCTCCACGGGCTGCTTAGCAAGGTGGTGCCAGAGGCGGAGCTGCAGGAGGAGACCA
TGCGGATCGCTAGGAAGATCGCATCGCTGAGCCGTCCGGTGGTGTCCCTGGGCAAAGCCACCTTCTACAA
GCAGCTGCCCCAGGACCTGGGGACGGCTTACTACCTCACCTCCCAGGCCATGGTGGACAACCTGGCCCTG
CGGGACGGGCAGGAGGGCATCACGGCCTTCCTCCAGAAGAGAAAACCTGTCTGGTCACACGAGCCAGTGT
GA

Translation (303 aa):
MAAVAVLRAFGASGPMCLRRGPWAQLPARFCSRDPAGAGRRESEPRPTSARQLDGIRNIVLSNPKKRNAL
SLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPV
PVIAMVNGLAAAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPRKVALEMLFTGEPIS
AQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLAL
RDGQEGITAFLQKRKPVWSHEPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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