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Report for CCDS33560.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33560.1 Public Homo sapiens 21 SH3BGR 24 110 108 CCDS HistoryNCBI Gene:6450Re-query CCDS DB by CCDS ID:33560.1Re-query CCDS DB by GeneID:6450See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33560.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380631.5 ENSP00000370005.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380631.5Link to Ensembl Protein Viewer:ENSP00000370005.1Re-query CCDS DB by Nucleotide ID:ENST00000380631Re-query CCDS DB by Protein ID:ENSP00000370005
Original member Current member EBI ENST00000380634.5 ENSP00000370008.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380634.5Link to Ensembl Protein Viewer:ENSP00000370008.1Re-query CCDS DB by Nucleotide ID:ENST00000380634Re-query CCDS DB by Protein ID:ENSP00000370008
Original member Current member EBI ENST00000380637.7 ENSP00000370011.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380637.7Link to Ensembl Protein Viewer:ENSP00000370011.3Re-query CCDS DB by Nucleotide ID:ENST00000380637Re-query CCDS DB by Protein ID:ENSP00000370011
Original member Current member NCBI NM_001001713.1 NP_001001713.1 Accepted alive Link to Nucleotide Sequence:NM_001001713.1Link to Protein Sequence:NP_001001713.1Re-query CCDS DB by Nucleotide ID:NM_001001713Re-query CCDS DB by Protein ID:NP_001001713Link to BLAST:NP_001001713.1
Original member Current member NCBI NM_001317742.1 NP_001304671.1 Accepted alive Link to Nucleotide Sequence:NM_001317742.1Link to Protein Sequence:NP_001304671.1Re-query CCDS DB by Nucleotide ID:NM_001317742Re-query CCDS DB by Protein ID:NP_001304671Link to BLAST:NP_001304671.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001713.1 128 P55822-2 128 100% 0 0
NP_001304671.1 128 P55822-2 128 100% 0 0

Chromosomal Locations for CCDS 33560.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 39462474 39462560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39475135 39475215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39499823 39499915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39508998 39509027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 39511680 39511775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGAGAGAGAATGTTCCTGGAGAGAAAAAACCTCAAAATGGGATTCCTTTGCCTCCCCAGATCTTCAATG
AGGAGCAGTACTGTGGGGATTTTGACTCTTTCTTCTCTGCAAAAGAAGAGAATATTATTTATTCCTTCCT
TGGTTTGGCTCCTCCTCCAGACTCAAAGGGATCAGAGAAGGCTGAAGAAGGTGGAGAAACTGAGGCACAA
AAAGAGGGCAGTGAAGATGTGGGCAACCTCCCTGAAGCCCAGGAGAAGAATGAAGAAGAAGGAGAGACAG
CCACAGAAGAGACGGAAGAAATAGCCATGGAGGGTGCGGAAGGGGAAGCCGAGGAGGAGGAAGAAACTGC
AGAAGGAGAAGAGCCTGGAGAAGACGAAGATTCCTAG

Translation (128 aa):
MRENVPGEKKPQNGIPLPPQIFNEEQYCGDFDSFFSAKEENIIYSFLGLAPPPDSKGSEKAEEGGETEAQ
KEGSEDVGNLPEAQEKNEEEGETATEETEEIAMEGAEGEAEEEEETAEGEEPGEDEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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