NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS13464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13464.1 Public Homo sapiens 20 PMEPA1 24 110 108 CCDS HistoryNCBI Gene:56937Re-query CCDS DB by CCDS ID:13464.1Re-query CCDS DB by GeneID:56937See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13464.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265626.8 ENSP00000265626.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000265626.8Link to Ensembl Protein Viewer:ENSP00000265626.4Re-query CCDS DB by Nucleotide ID:ENST00000265626Re-query CCDS DB by Protein ID:ENSP00000265626
Original member Current member EBI ENST00000395814.5 ENSP00000379159.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395814.5Link to Ensembl Protein Viewer:ENSP00000379159.1Re-query CCDS DB by Nucleotide ID:ENST00000395814Re-query CCDS DB by Protein ID:ENSP00000379159
Original member Current member EBI ENST00000395816.7 ENSP00000379161.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395816.7Link to Ensembl Protein Viewer:ENSP00000379161.3Re-query CCDS DB by Nucleotide ID:ENST00000395816Re-query CCDS DB by Protein ID:ENSP00000379161
Original member Current member NCBI NM_199170.3 NP_954639.1 Accepted alive Link to Nucleotide Sequence:NM_199170.3Link to Protein Sequence:NP_954639.1Re-query CCDS DB by Nucleotide ID:NM_199170Re-query CCDS DB by Protein ID:NP_954639Link to BLAST:NP_954639.1
Original member Current member NCBI NM_199171.3 NP_954640.1 Accepted alive Link to Nucleotide Sequence:NM_199171.3Link to Protein Sequence:NP_954640.1Re-query CCDS DB by Nucleotide ID:NM_199171Re-query CCDS DB by Protein ID:NP_954640Link to BLAST:NP_954640.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954639.1 237 Q969W9-3 237 100% 0 0
NP_954640.1 237 Q969W9-3 237 100% 0 0

Chromosomal Locations for CCDS 13464.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 57652053 57652598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57653033 57653086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 57659543 57659656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGATGGTGATGGTGGTGGTGATCACGTGCCTGCTGAGCCACTACAAGCTGTCTGCACGGTCCTTCATCA
GCCGGCACAGCCAGGGGCGGAGGAGAGAAGATGCCCTGTCCTCAGAAGGATGCCTGTGGCCCTCGGAGAG
CACAGTGTCAGGCAACGGAATCCCAGAGCCGCAGGTCTACGCCCCGCCTCGGCCCACCGACCGCCTGGCC
GTGCCGCCCTTCGCCCAGCGGGAGCGCTTCCACCGCTTCCAGCCCACCTATCCGTACCTGCAGCACGAGA
TCGACCTGCCACCCACCATCTCGCTGTCAGACGGGGAGGAGCCCCCACCCTACCAGGGCCCCTGCACCCT
CCAGCTTCGGGACCCCGAGCAGCAGCTGGAACTGAACCGGGAGTCGGTGCGCGCACCCCCAAACAGAACC
ATCTTCGACAGTGACCTGATGGATAGTGCCAGGCTGGGCGGCCCCTGCCCCCCCAGCAGTAACTCGGGCA
TCAGCGCCACGTGCTACGGCAGCGGCGGGCGCATGGAGGGGCCGCCGCCCACCTACAGCGAGGTCATCGG
CCACTACCCGGGGTCCTCCTTCCAGCACCAGCAGAGCAGTGGGCCGCCCTCCTTGCTGGAGGGGACCCGG
CTCCACCACACACACATCGCGCCCCTAGAGAGCGCAGCCATCTGGAGCAAAGAGAAGGATAAACAGAAAG
GACACCCTCTCTAG

Translation (237 aa):
MMVMVVVITCLLSHYKLSARSFISRHSQGRRREDALSSEGCLWPSESTVSGNGIPEPQVYAPPRPTDRLA
VPPFAQRERFHRFQPTYPYLQHEIDLPPTISLSDGEEPPPYQGPCTLQLRDPEQQLELNRESVRAPPNRT
IFDSDLMDSARLGGPCPPSSNSGISATCYGSGGRMEGPPPTYSEVIGHYPGSSFQHQQSSGPPSLLEGTR
LHHTHIAPLESAAIWSKEKDKQKGHPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH